Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JAV55_RS00600 Genome accession   NZ_CP065943
Coordinates   110439..111818 (+) Length   459 a.a.
NCBI ID   WP_026699256.1    Uniprot ID   -
Organism   Bacillus licheniformis strain H2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 105439..116818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS00580 (JAV55_00580) - 105806..106270 (+) 465 WP_003178269.1 CtsR family transcriptional regulator -
  JAV55_RS00585 (JAV55_00585) - 106285..106839 (+) 555 WP_003178271.1 UvrB/UvrC motif-containing protein -
  JAV55_RS00590 (JAV55_00590) - 106839..107930 (+) 1092 WP_003178273.1 protein arginine kinase -
  JAV55_RS00595 (JAV55_00595) clpC 107927..110359 (+) 2433 WP_003178275.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  JAV55_RS00600 (JAV55_00600) radA 110439..111818 (+) 1380 WP_026699256.1 DNA repair protein RadA Machinery gene
  JAV55_RS00605 (JAV55_00605) disA 111822..112898 (+) 1077 WP_003178277.1 DNA integrity scanning diadenylate cyclase DisA -
  JAV55_RS00610 (JAV55_00610) - 113030..114118 (+) 1089 WP_003178278.1 PIN/TRAM domain-containing protein -
  JAV55_RS00615 (JAV55_00615) ispD 114135..114830 (+) 696 WP_003178279.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JAV55_RS00620 (JAV55_00620) ispF 114823..115299 (+) 477 WP_003178280.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49844.29 Da        Isoelectric Point: 7.4339

>NTDB_id=515506 JAV55_RS00600 WP_026699256.1 110439..111818(+) (radA) [Bacillus licheniformis strain H2]
MAKTKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETIKKPAANRRTAFSHSVQTVQKPSPLTSIETTEEPRIKTKLGEF
NRVLGNGIVKGSLVLIGGDPGIGKSTLLLQVSAQLADSKENVLYISGEESVKQTKLRADRLGINSPTLHVLSETDMEYIT
SSIEEMNPSFVVVDSIQTVYQSDITSPPGSVSQVRECTAELMRIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGAAGSSVVASMEGTRPVLVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPHPTDCFIGEVGLT
GEVRRVSRIEQRVQEAAKLGFKRMIIPSANVEGWTKPKGIEVVGVENVAEALRASLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=515506 JAV55_RS00600 WP_026699256.1 110439..111818(+) (radA) [Bacillus licheniformis strain H2]
ATGGCTAAAACAAAGACTAAATTCATTTGTCACTCATGCGGCTACGAATCCGCCAAGTGGATGGGGAAATGCCCCGGATG
CGGTGCATGGAATACCATGGTGGAAGAAACGATAAAAAAACCCGCCGCCAACAGAAGAACCGCTTTTTCACATTCCGTTC
AAACAGTGCAAAAGCCTTCACCTCTCACTTCAATTGAAACAACAGAAGAGCCGCGAATTAAAACGAAACTTGGCGAATTC
AACCGCGTCTTGGGAAACGGCATCGTCAAAGGTTCACTTGTTTTAATCGGAGGCGACCCCGGCATCGGGAAATCAACCTT
GCTGCTTCAAGTATCTGCCCAGCTCGCTGATTCAAAAGAAAATGTCCTGTACATCTCAGGCGAAGAATCGGTCAAGCAGA
CAAAGCTGAGAGCAGACCGTCTAGGTATCAACAGTCCCACTCTTCACGTTTTATCTGAAACCGATATGGAGTATATTACG
TCTTCTATAGAAGAGATGAACCCATCATTCGTAGTGGTTGATTCGATTCAAACCGTTTACCAAAGTGATATCACATCCCC
TCCGGGCAGCGTCTCCCAGGTCAGGGAATGCACCGCTGAGCTGATGAGAATTGCAAAAACGAAAGGGATTCCAATATTTA
TCGTCGGGCATGTCACAAAAGAAGGTTCGATTGCCGGACCGAGACTTCTGGAACATATGGTCGACACCGTCCTTTACTTT
GAAGGTGAGCGGCATCATACATTTCGGATTTTAAGAGCCGTCAAAAACCGGTTTGGATCAACGAATGAAATGGGAATCTT
TGAAATGAGGGAAGAGGGCCTGACAGAGGTGCTGAATCCGTCAGAAATCTTTCTCGAAGAGCGCTCGGCGGGAGCGGCCG
GATCGAGTGTCGTGGCCTCAATGGAAGGCACGAGGCCAGTCTTAGTAGAGATTCAGGCGCTGATTTCCCCCACGAGCTTT
GGGAATCCGCGCCGGATGGCAACCGGGATTGATCATAACCGCGTCTCATTGCTAATGGCAGTTTTAGAAAAAAGGGTTGG
ACTGCTGCTGCAAAATCAAGACGCCTATTTAAAAGTCGCCGGAGGCGTCAAGCTGGACGAGCCAGCGATTGACCTCGCCG
TTGCAGTGAGCATCGCCTCAAGCTTCAGAGACACCCCGCCTCATCCGACGGATTGTTTTATCGGAGAAGTCGGATTGACA
GGGGAGGTCCGCAGAGTATCAAGGATAGAACAGAGGGTGCAGGAAGCGGCGAAGCTTGGTTTTAAAAGAATGATTATTCC
TTCTGCAAATGTAGAAGGATGGACAAAGCCGAAAGGAATCGAAGTCGTCGGCGTTGAAAATGTAGCTGAGGCCCTTCGAG
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

AAA domain (AAA_25)

(66-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

91.048

99.782

0.908
  radA Streptococcus mitis NCTC 12261

62.031

98.693

0.612
  radA Streptococcus pneumoniae Rx1

62.031

98.693

0.612
  radA Streptococcus pneumoniae D39

62.031

98.693

0.612
  radA Streptococcus pneumoniae R6

62.031

98.693

0.612
  radA Streptococcus pneumoniae TIGR4

62.031

98.693

0.612
  radA Streptococcus mitis SK321

61.81

98.693

0.61