Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   JAV55_RS00265 Genome accession   NZ_CP065943
Coordinates   48807..49097 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus licheniformis strain H2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 43807..54097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JAV55_RS00225 (JAV55_00225) - 43831..44160 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  JAV55_RS00230 (JAV55_00230) - 44172..44612 (+) 441 WP_003178158.1 YaaR family protein -
  JAV55_RS00235 (JAV55_00235) holB 44624..45613 (+) 990 WP_003178160.1 DNA polymerase III subunit delta' -
  JAV55_RS00240 (JAV55_00240) - 45616..46443 (+) 828 WP_003178162.1 stage 0 sporulation family protein -
  JAV55_RS00245 (JAV55_00245) yabA 46458..46820 (+) 363 WP_003178164.1 DNA replication initiation control protein YabA -
  JAV55_RS00250 (JAV55_00250) - 46885..47628 (+) 744 WP_003178166.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  JAV55_RS00255 (JAV55_00255) - 47615..47908 (+) 294 WP_003178169.1 GIY-YIG nuclease family protein -
  JAV55_RS00260 (JAV55_00260) rsmI 47883..48758 (+) 876 WP_025805862.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JAV55_RS00265 (JAV55_00265) abrB 48807..49097 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  JAV55_RS00270 (JAV55_00270) metG 49605..51593 (+) 1989 WP_003178175.1 methionine--tRNA ligase -
  JAV55_RS00275 (JAV55_00275) - 51678..52445 (+) 768 WP_003178177.1 TatD family hydrolase -
  JAV55_RS00280 (JAV55_00280) - 52562..53887 (+) 1326 WP_021837373.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=515504 JAV55_RS00265 WP_085959887.1 48807..49097(-) (abrB) [Bacillus licheniformis strain H2]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=515504 JAV55_RS00265 WP_085959887.1 48807..49097(-) (abrB) [Bacillus licheniformis strain H2]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938