Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KYX59_RS14450 Genome accession   NZ_CP079780
Coordinates   2488668..2489345 (+) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain BL12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2483668..2494345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX59_RS14415 (KYX59_14350) gspG 2484148..2484585 (+) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -
  KYX59_RS14420 (KYX59_14355) gspH 2484593..2485102 (+) 510 WP_024238847.1 type II secretion system minor pseudopilin GspH -
  KYX59_RS14425 (KYX59_14360) gspI 2485099..2485476 (+) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  KYX59_RS14430 (KYX59_14365) gspJ 2485469..2486056 (+) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  KYX59_RS14435 (KYX59_14370) gspK 2486049..2487032 (+) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  KYX59_RS14440 (KYX59_14375) gspL 2487047..2488210 (+) 1164 WP_001115238.1 type II secretion system protein GspL -
  KYX59_RS14445 (KYX59_14380) gspM 2488207..2488668 (+) 462 WP_001295161.1 type II secretion system protein GspM -
  KYX59_RS14450 (KYX59_14385) pilD 2488668..2489345 (+) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  KYX59_RS14455 (KYX59_14390) bfr 2489374..2489850 (-) 477 WP_000675504.1 bacterioferritin -
  KYX59_RS14460 (KYX59_14395) bfd 2489922..2490116 (-) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  KYX59_RS14465 (KYX59_14400) chiA 2490285..2492978 (-) 2694 WP_000773156.1 bifunctional chitinase/lysozyme -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=515467 KYX59_RS14450 WP_000178161.1 2488668..2489345(+) (pilD) [Escherichia coli strain BL12]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=515467 KYX59_RS14450 WP_000178161.1 2488668..2489345(+) (pilD) [Escherichia coli strain BL12]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378