Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KYX59_RS07935 Genome accession   NZ_CP079780
Coordinates   1173285..1174712 (+) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain BL12     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1168285..1179712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX59_RS07895 (KYX59_07830) yeeW 1168469..1168663 (+) 195 WP_000988599.1 DUF5983 family protein -
  KYX59_RS07900 (KYX59_07835) - 1168697..1168789 (+) 93 Protein_1174 DUF957 domain-containing protein -
  KYX59_RS07905 (KYX59_07840) - 1169078..1169215 (-) 138 Protein_1175 transposase domain-containing protein -
  KYX59_RS07910 (KYX59_07845) - 1169278..1169460 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KYX59_RS07915 (KYX59_07850) tmaR 1169561..1169890 (-) 330 WP_000450409.1 DUF496 family protein -
  KYX59_RS07920 (KYX59_07855) yeeA 1170062..1171120 (-) 1059 WP_001200905.1 FUSC family protein -
  KYX59_RS07925 (KYX59_07860) sbmC 1171318..1171791 (-) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  KYX59_RS07930 (KYX59_07865) dacD 1171910..1173076 (-) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KYX59_RS07935 (KYX59_07870) sbcB 1173285..1174712 (+) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  KYX59_RS07940 (KYX59_07875) tsuB 1174755..1174982 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KYX59_RS07945 (KYX59_07880) tsuA 1174996..1176054 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  KYX59_RS07950 (KYX59_07885) plaP 1176233..1177591 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KYX59_RS07955 (KYX59_07890) yoeI 1177581..1177643 (-) 63 WP_010723108.1 membrane protein YoeI -
  KYX59_RS07960 (KYX59_07895) yeeY 1177858..1178787 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KYX59_RS07965 (KYX59_07900) yeeZ 1178833..1179657 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=515444 KYX59_RS07935 WP_000980592.1 1173285..1174712(+) (sbcB) [Escherichia coli strain BL12]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=515444 KYX59_RS07935 WP_000980592.1 1173285..1174712(+) (sbcB) [Escherichia coli strain BL12]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583