Detailed information NTG0515427

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KYX57_RS21975
• Genome accession: NZ_CP079772
• Coordinates: 4494973..4495965 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GS04
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4489973..4500965

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KYX57_RS21945 (KYX57_21880)	ispD	4490034..4490744 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KYX57_RS21950 (KYX57_21885)	ispF	4490744..4491223 (+)	480	WP_113418415.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KYX57_RS21955 (KYX57_21890)	truD	4491220..4492269 (+)	1050	WP_170878218.1	tRNA pseudouridine(13) synthase TruD	-
KYX57_RS21960 (KYX57_21895)	surE	4492250..4493011 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KYX57_RS21965 (KYX57_21900)	pcm	4493005..4493631 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KYX57_RS21970 (KYX57_21905)	nlpD	4493816..4494910 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KYX57_RS21975 (KYX57_21910)	rpoS	4494973..4495965 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KYX57_RS21980 (KYX57_21915)	ygbN	4496059..4497423 (-)	1365	WP_000104441.1	GntP family transporter	-
KYX57_RS21985 (KYX57_21920)	ygbM	4497512..4498288 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KYX57_RS21990 (KYX57_21925)	ygbL	4498293..4498931 (-)	639	WP_001278994.1	aldolase	-
KYX57_RS21995 (KYX57_21930)	otnK	4498928..4500190 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=515427 KYX57_RS21975 WP_000081550.1 4494973..4495965(+) (rpoS) [Escherichia coli strain GS04]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=515427 KYX57_RS21975 WP_000081550.1 4494973..4495965(+) (rpoS) [Escherichia coli strain GS04]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715