Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KYX57_RS03275 Genome accession   NZ_CP079772
Coordinates   681487..682914 (-) Length   475 a.a.
NCBI ID   WP_000980592.1    Uniprot ID   -
Organism   Escherichia coli strain GS04     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 676487..687914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KYX57_RS03245 (KYX57_03245) yeeZ 676542..677366 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  KYX57_RS03250 (KYX57_03250) yeeY 677412..678341 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  KYX57_RS03255 (KYX57_03255) yoeI 678556..678618 (+) 63 WP_010723108.1 membrane protein YoeI -
  KYX57_RS03260 (KYX57_03260) plaP 678608..679966 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KYX57_RS03265 (KYX57_03265) tsuA 680145..681203 (+) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  KYX57_RS03270 (KYX57_03270) tsuB 681217..681444 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KYX57_RS03275 (KYX57_03275) sbcB 681487..682914 (-) 1428 WP_000980592.1 exodeoxyribonuclease I Machinery gene
  KYX57_RS03280 (KYX57_03280) dacD 683123..684289 (+) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KYX57_RS03285 (KYX57_03285) sbmC 684408..684881 (+) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  KYX57_RS03290 (KYX57_03290) yeeA 685079..686137 (+) 1059 WP_001200905.1 FUSC family protein -
  KYX57_RS03295 (KYX57_03295) tmaR 686309..686638 (+) 330 WP_000450409.1 DUF496 family protein -
  KYX57_RS03300 (KYX57_03300) - 686739..686921 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KYX57_RS03305 (KYX57_03305) - 686984..687121 (+) 138 Protein_649 transposase domain-containing protein -
  KYX57_RS03310 (KYX57_03310) - 687410..687502 (-) 93 Protein_650 DUF957 domain-containing protein -
  KYX57_RS03315 (KYX57_03315) yeeW 687536..687730 (-) 195 WP_000988599.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.77 Da        Isoelectric Point: 5.4720

>NTDB_id=515361 KYX57_RS03275 WP_000980592.1 681487..682914(-) (sbcB) [Escherichia coli strain GS04]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=515361 KYX57_RS03275 WP_000980592.1 681487..682914(-) (sbcB) [Escherichia coli strain GS04]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGAGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583