Detailed information NTG0515344

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KYX58_RS23625
• Genome accession: NZ_CP079770
• Coordinates: 4490131..4491123 (+)
• Length: 330 a.a.
• NCBI ID: WP_097754119.1
• Uniprot ID: -
• Organism: Escherichia coli strain HL15
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4485131..4496123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KYX58_RS23595 (KYX58_23495)	ispD	4485192..4485902 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KYX58_RS23600 (KYX58_23500)	ispF	4485902..4486381 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KYX58_RS23605 (KYX58_23505)	truD	4486378..4487427 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KYX58_RS23610 (KYX58_23510)	surE	4487408..4488169 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KYX58_RS23615 (KYX58_23515)	pcm	4488163..4488789 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KYX58_RS23620 (KYX58_23520)	nlpD	4488974..4490068 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KYX58_RS23625 (KYX58_23525)	rpoS	4490131..4491123 (+)	993	WP_097754119.1	RNA polymerase sigma factor RpoS	Regulator
KYX58_RS23630 (KYX58_23530)	ygbN	4491217..4492581 (-)	1365	WP_000104441.1	GntP family transporter	-
KYX58_RS23635 (KYX58_23535)	ygbM	4492670..4493446 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KYX58_RS23640 (KYX58_23540)	ygbL	4493451..4494089 (-)	639	WP_001278994.1	aldolase	-
KYX58_RS23645 (KYX58_23545)	otnK	4494181..4495347 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37986.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=515344 KYX58_RS23625 WP_097754119.1 4490131..4491123(+) (rpoS) [Escherichia coli strain HL15]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDISRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=515344 KYX58_RS23625 WP_097754119.1 4490131..4491123(+) (rpoS) [Escherichia coli strain HL15]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACATCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712