Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JC283_RS07750 Genome accession   NZ_CP065926
Coordinates   1632950..1633837 (-) Length   295 a.a.
NCBI ID   WP_063284339.1    Uniprot ID   A0A3D8YNB6
Organism   Staphylococcus pseudintermedius strain SP_9261-1A     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1627950..1638837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC283_RS07735 (JC283_07735) xerC 1628454..1629344 (-) 891 WP_101431373.1 tyrosine recombinase XerC -
  JC283_RS07740 (JC283_07740) trmFO 1629465..1630769 (-) 1305 WP_015729042.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  JC283_RS07745 (JC283_07745) topA 1630797..1632866 (-) 2070 WP_065520519.1 type I DNA topoisomerase -
  JC283_RS07750 (JC283_07750) dprA 1632950..1633837 (-) 888 WP_063284339.1 DNA-processing protein DprA Machinery gene
  JC283_RS07755 (JC283_07755) sucD 1634076..1634981 (-) 906 WP_014614090.1 succinate--CoA ligase subunit alpha -
  JC283_RS07760 (JC283_07760) sucC 1635003..1636169 (-) 1167 WP_015729040.1 ADP-forming succinate--CoA ligase subunit beta -
  JC283_RS07765 (JC283_07765) - 1636436..1636711 (-) 276 WP_015729039.1 hypothetical protein -
  JC283_RS07770 (JC283_07770) - 1636803..1637588 (-) 786 WP_037543184.1 ribonuclease HII -
  JC283_RS07775 (JC283_07775) ylqF 1637581..1638453 (-) 873 WP_015729037.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33529.00 Da        Isoelectric Point: 8.4807

>NTDB_id=515329 JC283_RS07750 WP_063284339.1 1632950..1633837(-) (dprA) [Staphylococcus pseudintermedius strain SP_9261-1A]
MKQLLLLLLYAGFSTQQIQSCYPKLCALTGNLPQRIQAFKSMFSHMSQFHLQQKLIRLDMLNIHTIEATLHEHQIVPIMI
DEPLYPPLLKEIYDPPLILFCKGRLELLQHSTNSLGIVGARQHTAYTPQALETLFNTFQHFPLTIISGLAHGTDALAHHY
AIRHDLSTIGVLGFGHFHHYPKNTQALRQRMEQHHLTLSEYPPYTPIAKFRFPERNRIISGLSKGILITEAKEKSGALIT
LDQALEQNRNVYVLPGDMFNVHTKGNMLRVKEGAEIVLCAQDILKDYANLNVNAL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=515329 JC283_RS07750 WP_063284339.1 1632950..1633837(-) (dprA) [Staphylococcus pseudintermedius strain SP_9261-1A]
ATGAAACAATTACTACTATTATTACTGTACGCTGGATTTTCAACACAACAAATCCAATCCTGTTACCCTAAACTTTGTGC
TTTAACAGGAAATCTACCTCAGCGCATTCAAGCCTTCAAATCAATGTTTTCGCACATGTCGCAATTCCATTTACAACAAA
AGCTCATACGACTCGATATGCTTAATATTCATACGATTGAAGCGACGTTACATGAACATCAAATTGTCCCGATTATGATA
GACGAACCGCTTTATCCACCACTGTTAAAAGAAATTTATGATCCCCCGTTGATTTTATTTTGTAAAGGACGACTTGAACT
GCTTCAACATTCTACTAATAGTCTTGGCATTGTAGGCGCAAGGCAACATACAGCATACACGCCACAAGCGCTTGAAACAC
TTTTTAACACATTTCAACATTTTCCACTAACGATTATTTCAGGGCTGGCACACGGTACAGACGCACTCGCACATCATTAT
GCGATTCGACATGACTTGTCCACGATCGGTGTGCTCGGTTTTGGGCATTTTCATCATTATCCTAAAAACACACAAGCATT
ACGCCAGAGGATGGAACAACATCATTTGACTCTAAGCGAATATCCACCTTACACGCCTATTGCTAAATTTAGATTTCCTG
AACGCAATCGCATTATTAGTGGTTTGTCGAAAGGAATACTTATCACTGAAGCAAAAGAAAAAAGTGGCGCGCTCATTACG
TTGGATCAGGCATTAGAACAAAATCGTAATGTTTATGTACTGCCGGGGGATATGTTCAACGTGCATACGAAAGGTAATAT
GCTACGTGTCAAAGAGGGAGCAGAAATTGTATTATGTGCCCAGGATATATTGAAAGATTATGCAAATTTAAATGTTAACG
CTTTGTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

50.69

98.305

0.498
  dprA Staphylococcus aureus N315

50.345

98.305

0.495