Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JC283_RS03965 Genome accession   NZ_CP065926
Coordinates   878174..878890 (-) Length   238 a.a.
NCBI ID   WP_100006618.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_9261-1A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 873174..883890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC283_RS12745 - 874227..874341 (-) 115 Protein_765 ribose transporter RbsU -
  JC283_RS03950 (JC283_03950) - 874679..875626 (+) 948 WP_063278589.1 LacI family DNA-binding transcriptional regulator -
  JC283_RS03955 (JC283_03955) - 875682..877166 (+) 1485 WP_063278588.1 sucrose-6-phosphate hydrolase -
  JC283_RS03960 (JC283_03960) - 877170..878114 (+) 945 WP_115807334.1 carbohydrate kinase -
  JC283_RS03965 (JC283_03965) agrA 878174..878890 (-) 717 WP_100006618.1 LytTR family DNA-binding domain-containing protein Regulator
  JC283_RS03970 (JC283_03970) - 878904..879959 (-) 1056 WP_233535950.1 sensor histidine kinase -
  JC283_RS03975 (JC283_03975) - 880220..880357 (-) 138 WP_063278585.1 cyclic lactone autoinducer peptide -
  JC283_RS03980 (JC283_03980) - 880359..880925 (-) 567 WP_140232597.1 accessory gene regulator AgrB -
  JC283_RS03990 (JC283_03990) - 881682..882485 (-) 804 WP_099987197.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28016.18 Da        Isoelectric Point: 5.4368

>NTDB_id=515312 JC283_RS03965 WP_100006618.1 878174..878890(-) (agrA) [Staphylococcus pseudintermedius strain SP_9261-1A]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDEVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=515312 JC283_RS03965 WP_100006618.1 878174..878890(-) (agrA) [Staphylococcus pseudintermedius strain SP_9261-1A]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGAAGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.773

100

0.828