Detailed information NTG0515264

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KX927_RS24285
• Genome accession: NZ_CP079767
• Coordinates: 4484937..4485929 (+)
• Length: 330 a.a.
• NCBI ID: WP_097754119.1
• Uniprot ID: -
• Organism: Escherichia coli strain SF10
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4479937..4490929

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KX927_RS24255 (KX927_24125)	ispD	4479998..4480708 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KX927_RS24260 (KX927_24130)	ispF	4480708..4481187 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KX927_RS24265 (KX927_24135)	truD	4481184..4482233 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KX927_RS24270 (KX927_24140)	surE	4482214..4482975 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KX927_RS24275 (KX927_24145)	pcm	4482969..4483595 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KX927_RS24280 (KX927_24150)	nlpD	4483780..4484874 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KX927_RS24285 (KX927_24155)	rpoS	4484937..4485929 (+)	993	WP_097754119.1	RNA polymerase sigma factor RpoS	Regulator
KX927_RS24290 (KX927_24160)	ygbN	4486023..4487387 (-)	1365	WP_000104441.1	GntP family transporter	-
KX927_RS24295 (KX927_24165)	ygbM	4487476..4488252 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KX927_RS24300 (KX927_24170)	ygbL	4488257..4488895 (-)	639	WP_001278994.1	aldolase	-
KX927_RS24305 (KX927_24175)	otnK	4488987..4490153 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37986.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=515264 KX927_RS24285 WP_097754119.1 4484937..4485929(+) (rpoS) [Escherichia coli strain SF10]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDISRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=515264 KX927_RS24285 WP_097754119.1 4484937..4485929(+) (rpoS) [Escherichia coli strain SF10]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACATCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	72.755	97.879	0.712