Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   KX927_RS19585 Genome accession   NZ_CP079767
Coordinates   3537339..3538007 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain SF10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3532339..3543007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX927_RS19555 (KX927_19420) yicC 3532358..3533221 (-) 864 WP_000621336.1 YicC/YloC family endoribonuclease -
  KX927_RS19560 (KX927_19425) rph 3533348..3534064 (+) 717 WP_001247089.1 ribonuclease PH -
  KX927_RS19565 (KX927_19430) pyrE 3534130..3534771 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  KX927_RS19570 (KX927_19435) slmA 3534808..3535404 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  KX927_RS19575 (KX927_19440) dut 3535511..3535969 (-) 459 WP_000976070.1 dUTP diphosphatase -
  KX927_RS19580 (KX927_19445) coaBC 3535947..3537167 (-) 1221 WP_087902422.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  KX927_RS19585 (KX927_19450) radC 3537339..3538007 (+) 669 WP_001297375.1 RadC family protein Machinery gene
  KX927_RS19590 (KX927_19455) rpmB 3538224..3538460 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  KX927_RS19595 (KX927_19460) rpmG 3538481..3538648 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  KX927_RS19600 (KX927_19465) mutM 3538746..3539555 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  KX927_RS19605 (KX927_19470) coaD 3539594..3540073 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  KX927_RS19610 (KX927_19475) waaA 3540081..3541358 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  KX927_RS19615 (KX927_19480) rfaQ 3541771..3542829 (+) 1059 WP_000360402.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=515246 KX927_RS19585 WP_001297375.1 3537339..3538007(+) (radC) [Escherichia coli strain SF10]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=515246 KX927_RS19585 WP_001297375.1 3537339..3538007(+) (radC) [Escherichia coli strain SF10]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGTTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496