Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   JC286_RS11375 Genome accession   NZ_CP065921
Coordinates   2376693..2378063 (-) Length   456 a.a.
NCBI ID   WP_198461176.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_11304-3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2371693..2383063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC286_RS11350 (JC286_11350) cysE 2371858..2372523 (-) 666 WP_172425792.1 serine O-acetyltransferase -
  JC286_RS11355 (JC286_11355) gltX 2372911..2374365 (-) 1455 WP_015728607.1 glutamate--tRNA ligase -
  JC286_RS11360 (JC286_11360) ispF 2374442..2374921 (-) 480 WP_014614766.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  JC286_RS11365 (JC286_11365) ispD 2374914..2375612 (-) 699 WP_014614767.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  JC286_RS11370 (JC286_11370) - 2375613..2376674 (-) 1062 WP_014614768.1 PIN/TRAM domain-containing protein -
  JC286_RS11375 (JC286_11375) radA 2376693..2378063 (-) 1371 WP_198461176.1 DNA repair protein RadA Machinery gene
  JC286_RS11380 (JC286_11380) - 2378450..2379196 (-) 747 WP_015728605.1 ABC transporter permease -
  JC286_RS11385 (JC286_11385) - 2379183..2379887 (-) 705 WP_014614771.1 ABC transporter ATP-binding protein -
  JC286_RS11390 (JC286_11390) - 2379902..2380861 (-) 960 WP_233511255.1 hypothetical protein -
  JC286_RS11395 (JC286_11395) - 2380861..2381673 (-) 813 WP_037543946.1 SagB family peptide dehydrogenase -
  JC286_RS11400 (JC286_11400) - 2381693..2382913 (-) 1221 WP_014614774.1 YcaO-like family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50010.48 Da        Isoelectric Point: 7.0051

>NTDB_id=515236 JC286_RS11375 WP_198461176.1 2376693..2378063(-) (radA) [Staphylococcus pseudintermedius strain SP_11304-3A]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLDDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPSVDLGIVIATASSFKDQAVDGLDCYIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWHFPEGIEVIGVTSVNEALKYALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=515236 JC286_RS11375 WP_198461176.1 2376693..2378063(-) (radA) [Staphylococcus pseudintermedius strain SP_11304-3A]
GTGGCAAAAACAAAAACAATTTTTGAATGTACGGCCTGTGGTTATCAATCGCCTAAATGGATGGGGAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTACGGGCGCAAAAAACAA
GTTCAGCAAAAATACAAAAGCTCGATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGAATAGGGAAGTCCACATTGTT
ACTTCAAATGTGCGCGGCTTTATCTAAAGAGAAAAGGGTGCTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCGGATCGTTTGGATGAAGATGCGAGTCAACTTAACGTGTTTGCGGAAACGGACTTAATGGTTATTCATGAAGCG
GTGAAAAAGGTCGAACCTGATTTAATTGTAGTGGACTCTATTCAGACGATCTACCATCCCGAAATCAGTTCGGCGCCTGG
CTCTGTATCTCAAGTTCGTGAAAGTACACAAAGCTTGATGCACATCGCAAAACAAATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATCGCGGGGCCGCGTTTACTTGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAACCGTTTTGGCTCTACGAATGAAATGGGTATTTTTGAAAT
GAAACAGTCAGGTTTAAAAAGCGTGCTTAACCCGTCAGAAATGTTTTTAGAAGAACGGACGACCAATGTTGCAGGTTCGA
CAATTGTCGCAACGATGGAAGGGACACGACCATTGTTAATTGAAGTACAAGCGCTTGTCACACCGACGACGTTCAATAAT
CCGAGACGTATGGCGACAGGTATTGACCATAATCGCCTCAGTTTGTTAATGGCGGTGTTAGAGAAAAAAGAAGGTTATTT
ATTACAACAACAAGACGCTTATATTAAGGTGGCTGGGGGCGTCAAACTCTCTGAACCTTCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGACGGCCTCGATTGTTATATTGGCGAGGTTGGATTGACTGGTGAG
GTCCGCCGTGTTTCGCGCATTGAGCAACGTGTGCAAGAAGCAGCAAAATTGGGCTTTAAACGTGTGATTATCCCTAAAAA
CAATATTGGCGGATGGCACTTCCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAATACGCAT
TAAAAAATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.656
  radA Streptococcus pneumoniae Rx1

58.407

99.123

0.579
  radA Streptococcus pneumoniae D39

58.407

99.123

0.579
  radA Streptococcus pneumoniae R6

58.407

99.123

0.579
  radA Streptococcus pneumoniae TIGR4

58.407

99.123

0.579
  radA Streptococcus mitis NCTC 12261

58.407

99.123

0.579
  radA Streptococcus mitis SK321

58.407

99.123

0.579