Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JC286_RS03825 Genome accession   NZ_CP065921
Coordinates   865267..865983 (-) Length   238 a.a.
NCBI ID   WP_037542586.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_11304-3A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 860267..870983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC286_RS12650 - 861321..861435 (-) 115 Protein_741 ribose transporter RbsU -
  JC286_RS03810 (JC286_03810) - 861772..862719 (+) 948 WP_099997326.1 LacI family DNA-binding transcriptional regulator -
  JC286_RS03815 (JC286_03815) - 862775..864259 (+) 1485 WP_198461374.1 sucrose-6-phosphate hydrolase -
  JC286_RS03820 (JC286_03820) - 864263..865207 (+) 945 WP_198461376.1 carbohydrate kinase -
  JC286_RS03825 (JC286_03825) agrA 865267..865983 (-) 717 WP_037542586.1 quorum-sensing response regulator AgrA Regulator
  JC286_RS03830 (JC286_03830) - 865997..866860 (-) 864 WP_233508848.1 sensor histidine kinase -
  JC286_RS03835 (JC286_03835) - 867312..867449 (-) 138 WP_020219911.1 cyclic lactone autoinducer peptide AgrD -
  JC286_RS03840 (JC286_03840) - 867451..868017 (-) 567 WP_020219910.1 accessory gene regulator AgrB -
  JC286_RS03850 (JC286_03850) - 868774..869577 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28003.09 Da        Isoelectric Point: 5.0893

>NTDB_id=515214 JC286_RS03825 WP_037542586.1 865267..865983(-) (agrA) [Staphylococcus pseudintermedius strain SP_11304-3A]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=515214 JC286_RS03825 WP_037542586.1 865267..865983(-) (agrA) [Staphylococcus pseudintermedius strain SP_11304-3A]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGTGAACGCATGGTGTCCATTATTGAAAATTATATTATGATTGA
AGAGAAACCGATGGAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.613

100

0.836