Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JC281_RS03770 Genome accession   NZ_CP065920
Coordinates   851553..852269 (-) Length   238 a.a.
NCBI ID   WP_100006618.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain SP_11306-1A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 846553..857269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC281_RS03750 (JC281_03750) - 846566..847513 (+) 948 WP_099997326.1 LacI family DNA-binding transcriptional regulator -
  JC281_RS03755 (JC281_03755) - 847569..849053 (+) 1485 WP_198456173.1 sucrose-6-phosphate hydrolase -
  JC281_RS03760 (JC281_03760) - 849057..850001 (+) 945 WP_198456174.1 carbohydrate kinase family protein -
  JC281_RS03765 (JC281_03765) - 850195..851514 (+) 1320 WP_100004563.1 ISL3 family transposase -
  JC281_RS03770 (JC281_03770) agrA 851553..852269 (-) 717 WP_100006618.1 quorum-sensing response regulator AgrA Regulator
  JC281_RS03775 (JC281_03775) agrC 852283..853575 (-) 1293 WP_070407747.1 quorum-sensing sensor histidine kinase AgrC -
  JC281_RS03780 (JC281_03780) agrD 853599..853736 (-) 138 WP_063278585.1 cyclic lactone autoinducer peptide AgrD -
  JC281_RS03785 (JC281_03785) - 853738..854304 (-) 567 WP_198456175.1 accessory gene regulator AgrB -
  JC281_RS12645 (JC281_03790) - 854696..854773 (+) 78 WP_126511050.1 delta-lysin family phenol-soluble modulin -
  JC281_RS03795 (JC281_03795) - 855060..855863 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28016.18 Da        Isoelectric Point: 5.4368

>NTDB_id=515182 JC281_RS03770 WP_100006618.1 851553..852269(-) (agrA) [Staphylococcus pseudintermedius strain SP_11306-1A]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDEVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=515182 JC281_RS03770 WP_100006618.1 851553..852269(-) (agrA) [Staphylococcus pseudintermedius strain SP_11306-1A]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGAAGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTACTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.773

100

0.828