Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   JC284_RS03790 Genome accession   NZ_CP065919
Coordinates   855467..856183 (-) Length   238 a.a.
NCBI ID   WP_014613411.1    Uniprot ID   X2JA42
Organism   Staphylococcus pseudintermedius strain SP_11306-4A     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 850467..861183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JC284_RS03770 (JC284_03770) - 851521..851635 (-) 115 Protein_737 ribose transporter RbsU -
  JC284_RS03775 (JC284_03775) - 851972..852919 (+) 948 WP_014613408.1 LacI family DNA-binding transcriptional regulator -
  JC284_RS03780 (JC284_03780) - 852975..854459 (+) 1485 WP_100007030.1 sucrose-6-phosphate hydrolase -
  JC284_RS03785 (JC284_03785) - 854463..855407 (+) 945 WP_014613410.1 carbohydrate kinase -
  JC284_RS03790 (JC284_03790) agrA 855467..856183 (-) 717 WP_014613411.1 LytTR family DNA-binding domain-containing protein Regulator
  JC284_RS03795 (JC284_03795) - 856197..857252 (-) 1056 WP_241538065.1 sensor histidine kinase -
  JC284_RS03800 (JC284_03800) - 857513..857650 (-) 138 WP_014613413.1 cyclic lactone autoinducer peptide -
  JC284_RS03805 (JC284_03805) - 857652..858218 (-) 567 WP_014613414.1 accessory gene regulator AgrB -
  JC284_RS03815 (JC284_03815) - 858974..859777 (-) 804 WP_014613416.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28002.15 Da        Isoelectric Point: 5.4331

>NTDB_id=515151 JC284_RS03790 WP_014613411.1 855467..856183(-) (agrA) [Staphylococcus pseudintermedius strain SP_11306-4A]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=515151 JC284_RS03790 WP_014613411.1 855467..856183(-) (agrA) [Staphylococcus pseudintermedius strain SP_11306-4A]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X2JA42

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832