Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   N135_RS01030 Genome accession   NC_022362
Coordinates   200764..202269 (+) Length   501 a.a.
NCBI ID   WP_002851902.1    Uniprot ID   Q0PBU9
Organism   Campylobacter jejuni subsp. jejuni 00-2425     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 195764..207269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N135_RS01005 (N135_00203) fliI 196186..197571 (-) 1386 WP_002851735.1 flagellar protein export ATPase FliI -
  N135_RS01010 (N135_00204) folE 197571..198143 (-) 573 WP_002851990.1 GTP cyclohydrolase I FolE -
  N135_RS01015 (N135_00205) tig 198286..199620 (+) 1335 WP_002851938.1 trigger factor -
  N135_RS01020 (N135_00206) clpP 199620..200204 (+) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  N135_RS01025 (N135_00207) def 200240..200767 (+) 528 WP_002851936.1 peptide deformylase -
  N135_RS01030 (N135_00208) comM 200764..202269 (+) 1506 WP_002851902.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  N135_RS01035 (N135_00209) - 202271..202969 (+) 699 WP_002826913.1 NYN domain-containing protein -
  N135_RS01040 (N135_00210) - 202953..204323 (+) 1371 WP_002851837.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  N135_RS01045 (N135_00211) purN 204314..204880 (+) 567 WP_002851620.1 phosphoribosylglycinamide formyltransferase -
  N135_RS01050 (N135_00212) - 204952..205671 (+) 720 WP_002851673.1 TerC family protein -
  N135_RS01055 (N135_00213) - 205664..205873 (+) 210 WP_002851709.1 alkylphosphonate utilization protein -
  N135_RS01060 (N135_00214) - 205883..207067 (+) 1185 WP_002851935.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56422.44 Da        Isoelectric Point: 8.7417

>NTDB_id=51511 N135_RS01030 WP_002851902.1 200764..202269(+) (comM) [Campylobacter jejuni subsp. jejuni 00-2425]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNISKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=51511 N135_RS01030 WP_002851902.1 200764..202269(+) (comM) [Campylobacter jejuni subsp. jejuni 00-2425]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTACAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACACTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATCACTATCAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTAAAAAAGCTAAGATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTTTCTCACAATCATCCTTTATTTGCAAACCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGCATGTGTGCTAAACGCCTTGTT
TATATCATGCCCCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTAGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTCTCCAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAGCAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PBU9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.495

99.601

0.473

Multiple sequence alignment