Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   I9X29_RS25505 Genome accession   NZ_CP065867
Coordinates   5481145..5481702 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain TJ2014-049     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5476145..5486702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9X29_RS25485 (I9X29_25485) pilR 5477421..5478758 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  I9X29_RS25490 (I9X29_25490) thiO 5478804..5479898 (-) 1095 WP_009316267.1 glycine oxidase ThiO -
  I9X29_RS25495 (I9X29_25495) - 5480033..5480542 (+) 510 WP_009316266.1 GspH/FimT family pseudopilin -
  I9X29_RS25500 (I9X29_25500) - 5480648..5481154 (+) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  I9X29_RS25505 (I9X29_25505) pilV 5481145..5481702 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  I9X29_RS25510 (I9X29_25510) pilW 5481699..5482523 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  I9X29_RS25515 (I9X29_25515) pilX 5482520..5483107 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  I9X29_RS25520 (I9X29_25520) pilY1 5483119..5486604 (+) 3486 WP_043103572.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=515104 I9X29_RS25505 WP_003094697.1 5481145..5481702(+) (pilV) [Pseudomonas aeruginosa strain TJ2014-049]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=515104 I9X29_RS25505 WP_003094697.1 5481145..5481702(+) (pilV) [Pseudomonas aeruginosa strain TJ2014-049]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978