Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   KXJ73_RS21840 Genome accession   NZ_CP079747
Coordinates   4501886..4502878 (-) Length   330 a.a.
NCBI ID   WP_000224456.1    Uniprot ID   -
Organism   Escherichia coli strain DL21     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4496886..4507878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXJ73_RS21830 (KXJ73_21820) yieP 4499778..4500470 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  KXJ73_RS21835 (KXJ73_21825) mdtD 4500493..4501920 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  KXJ73_RS21840 (KXJ73_21830) cytR 4501886..4502878 (-) 993 WP_000224456.1 ribose operon transcriptional repressor RbsR Regulator
  KXJ73_RS21845 (KXJ73_21835) rbsK 4502882..4503811 (-) 930 WP_012767772.1 ribokinase -
  KXJ73_RS21850 (KXJ73_21840) rbsB 4503937..4504827 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  KXJ73_RS21855 (KXJ73_21845) rbsC 4504852..4505817 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  KXJ73_RS21860 (KXJ73_21850) rbsA 4505822..4507327 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  KXJ73_RS21865 (KXJ73_21855) rbsD 4507335..4507571 (-) 237 Protein_4295 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36563.82 Da        Isoelectric Point: 5.0711

>NTDB_id=514989 KXJ73_RS21840 WP_000224456.1 4501886..4502878(-) (cytR) [Escherichia coli strain DL21]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGDSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=514989 KXJ73_RS21840 WP_000224456.1 4501886..4502878(-) (cytR) [Escherichia coli strain DL21]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTGATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361