Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   IAU57_RS08905 Genome accession   NZ_CP065848
Coordinates   1919592..1920149 (-) Length   185 a.a.
NCBI ID   WP_003102600.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1914592..1925149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU57_RS08890 (IAU57_08890) pilY1 1914684..1918175 (-) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -
  IAU57_RS08895 (IAU57_08895) pilX 1918187..1918774 (-) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  IAU57_RS08900 (IAU57_08900) pilW 1918771..1919595 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  IAU57_RS08905 (IAU57_08905) pilV 1919592..1920149 (-) 558 WP_003102600.1 type 4a pilus minor pilin PilV Machinery gene
  IAU57_RS08910 (IAU57_08910) - 1920140..1920646 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  IAU57_RS08915 (IAU57_08915) - 1920752..1921261 (-) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  IAU57_RS08920 (IAU57_08920) thiO 1921396..1922490 (+) 1095 WP_020750388.1 glycine oxidase ThiO -
  IAU57_RS08925 (IAU57_08925) pilR 1922536..1923873 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20047.13 Da        Isoelectric Point: 8.2254

>NTDB_id=514948 IAU57_RS08905 WP_003102600.1 1919592..1920149(-) (pilV) [Pseudomonas aeruginosa strain CMC-097]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVDRNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=514948 IAU57_RS08905 WP_003102600.1 1919592..1920149(-) (pilV) [Pseudomonas aeruginosa strain CMC-097]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGATCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTAGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989