Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   KXJ73_RS08475 Genome accession   NZ_CP079747
Coordinates   1792023..1793450 (-) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain DL21     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1787023..1798450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXJ73_RS08445 (KXJ73_08440) yeeZ 1787078..1787902 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  KXJ73_RS08450 (KXJ73_08445) yeeY 1787948..1788877 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  KXJ73_RS08455 (KXJ73_08450) yoeI 1789092..1789154 (+) 63 WP_010723108.1 membrane protein YoeI -
  KXJ73_RS08460 (KXJ73_08455) plaP 1789144..1790502 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  KXJ73_RS08465 (KXJ73_08460) tsuA 1790681..1791739 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  KXJ73_RS08470 (KXJ73_08465) tsuB 1791753..1791980 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  KXJ73_RS08475 (KXJ73_08470) sbcB 1792023..1793450 (-) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  KXJ73_RS08480 (KXJ73_08475) dacD 1793659..1794825 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  KXJ73_RS08485 (KXJ73_08480) sbmC 1794944..1795417 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  KXJ73_RS08490 (KXJ73_08485) yeeA 1795615..1796673 (+) 1059 WP_001200905.1 FUSC family protein -
  KXJ73_RS08495 (KXJ73_08490) tmaR 1796845..1797174 (+) 330 WP_000450409.1 DUF496 family protein -
  KXJ73_RS08500 (KXJ73_08495) - 1797275..1797457 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  KXJ73_RS08505 (KXJ73_08500) - 1797520..1797657 (+) 138 Protein_1671 transposase domain-containing protein -
  KXJ73_RS08510 (KXJ73_08505) - 1797946..1798038 (-) 93 Protein_1672 DUF957 domain-containing protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=514947 KXJ73_RS08475 WP_000980563.1 1792023..1793450(-) (sbcB) [Escherichia coli strain DL21]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=514947 KXJ73_RS08475 WP_000980563.1 1792023..1793450(-) (sbcB) [Escherichia coli strain DL21]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581