Detailed information NTG0514935

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KXJ73_RS05095
• Genome accession: NZ_CP079747
• Coordinates: 1065006..1065998 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain DL21
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1060006..1070998

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KXJ73_RS05065 (KXJ73_05060)	ispD	1060067..1060777 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KXJ73_RS05070 (KXJ73_05065)	ispF	1060777..1061256 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KXJ73_RS05075 (KXJ73_05070)	truD	1061253..1062302 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KXJ73_RS05080 (KXJ73_05075)	surE	1062283..1063044 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KXJ73_RS05085 (KXJ73_05080)	pcm	1063038..1063664 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KXJ73_RS05090 (KXJ73_05085)	nlpD	1063849..1064943 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
KXJ73_RS05095 (KXJ73_05090)	rpoS	1065006..1065998 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
KXJ73_RS05100 (KXJ73_05095)	ygbN	1066092..1067456 (-)	1365	WP_000104459.1	GntP family transporter	-
KXJ73_RS05105 (KXJ73_05100)	ygbM	1067545..1068321 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
KXJ73_RS05110 (KXJ73_05105)	ygbL	1068326..1068964 (-)	639	WP_001278994.1	aldolase	-
KXJ73_RS05115 (KXJ73_05110)	otnK	1068961..1070223 (-)	1263	WP_000590371.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=514935 KXJ73_RS05095 WP_000081550.1 1065006..1065998(+) (rpoS) [Escherichia coli strain DL21]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=514935 KXJ73_RS05095 WP_000081550.1 1065006..1065998(+) (rpoS) [Escherichia coli strain DL21]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715