Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   I8N77_RS16520 Genome accession   NZ_CP065846
Coordinates   3359853..3360449 (-) Length   198 a.a.
NCBI ID   WP_048323585.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain KqPF42     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3354853..3365449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N77_RS16505 (I8N77_16505) helD 3355064..3357118 (-) 2055 WP_048323587.1 DNA helicase IV -
  I8N77_RS16510 (I8N77_16510) - 3357243..3357689 (+) 447 WP_004201437.1 YccF domain-containing protein -
  I8N77_RS16515 (I8N77_16515) yccS 3357707..3359842 (+) 2136 WP_004201435.1 YccS family putative transporter -
  I8N77_RS16520 (I8N77_16520) sxy/tfoX 3359853..3360449 (-) 597 WP_048323585.1 TfoX/Sxy family DNA transformation protein Regulator
  I8N77_RS16525 (I8N77_16525) sulA 3360798..3361307 (+) 510 WP_017899460.1 SOS-induced cell division inhibitor SulA -
  I8N77_RS16530 (I8N77_16530) ompA 3361660..3362730 (+) 1071 WP_004201430.1 porin OmpA -
  I8N77_RS16535 (I8N77_16535) matP 3362921..3363373 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  I8N77_RS16540 (I8N77_16540) - 3363559..3365316 (+) 1758 WP_048323579.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22579.34 Da        Isoelectric Point: 10.2936

>NTDB_id=514927 I8N77_RS16520 WP_048323585.1 3359853..3360449(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KqPF42]
MKKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKCRRRSSARLKDLPNISFHMELQLIHSGIPDVLALRQVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWAAAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=514927 I8N77_RS16520 WP_048323585.1 3359853..3360449(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain KqPF42]
ATGAAAAAACTTGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTTCACTCTCGCCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGAAATATTTATCTGAAAGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACATGGGCGCATCGTGCCGCTAAAG
TATTATCAAATTGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTATCGCTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATGTCGCCGCCGGTCGTCGGCACGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGCAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGTGAGAACAAT
GCTTCCCTATCACACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTCCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGGCTGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.769

98.485

0.5