Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KXJ73_RS02050 Genome accession   NZ_CP079747
Coordinates   446076..446753 (-) Length   225 a.a.
NCBI ID   WP_000178163.1    Uniprot ID   -
Organism   Escherichia coli strain DL21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441076..451753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KXJ73_RS02030 (KXJ73_02025) tuf 441600..442784 (+) 1185 WP_000031783.1 elongation factor Tu -
  KXJ73_RS02035 (KXJ73_02030) - 443076..445136 (+) 2061 WP_000773160.1 carbohydrate-binding protein -
  KXJ73_RS02040 (KXJ73_02035) bfd 445305..445499 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  KXJ73_RS02045 (KXJ73_02040) bfr 445571..446047 (+) 477 WP_000675504.1 bacterioferritin -
  KXJ73_RS02050 (KXJ73_02045) pilD 446076..446753 (-) 678 WP_000178163.1 prepilin peptidase GspO Machinery gene
  KXJ73_RS02055 (KXJ73_02050) gspM 446753..447214 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  KXJ73_RS02060 (KXJ73_02055) gspL 447211..448374 (-) 1164 WP_001115228.1 type II secretion system protein GspL -
  KXJ73_RS02065 (KXJ73_02060) gspK 448389..449372 (-) 984 WP_001058521.1 type II secretion system minor pseudopilin GspK -
  KXJ73_RS02070 (KXJ73_02065) gspJ 449365..449952 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  KXJ73_RS02075 (KXJ73_02070) gspI 449945..450322 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  KXJ73_RS02080 (KXJ73_02075) gspH 450319..450828 (-) 510 WP_001076029.1 type II secretion system minor pseudopilin GspH -
  KXJ73_RS02085 (KXJ73_02080) gspG 450836..451273 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24928.81 Da        Isoelectric Point: 7.9563

>NTDB_id=514922 KXJ73_RS02050 WP_000178163.1 446076..446753(-) (pilD) [Escherichia coli strain DL21]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTSAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=514922 KXJ73_RS02050 WP_000178163.1 446076..446753(-) (pilD) [Escherichia coli strain DL21]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTAGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378