Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SSUST1_RS09375 Genome accession   NC_017950
Coordinates   1873828..1875195 (-) Length   455 a.a.
NCBI ID   WP_024405232.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1856979..1879514 1873828..1875195 within 0


Gene organization within MGE regions


Location: 1856979..1879514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS09275 (SSUST1_1902) rnmV 1856979..1857546 (-) 568 Protein_1786 ribonuclease M5 -
  SSUST1_RS09280 (SSUST1_1904) - 1857530..1858312 (-) 783 WP_014736471.1 TatD family hydrolase -
  SSUST1_RS09285 (SSUST1_1905) rpmH 1858419..1858556 (-) 138 WP_002939016.1 50S ribosomal protein L34 -
  SSUST1_RS09290 (SSUST1_1906) jag 1858724..1859719 (-) 996 WP_014736472.1 RNA-binding cell elongation regulator Jag/EloR -
  SSUST1_RS09295 (SSUST1_1907) - 1859739..1860551 (-) 813 WP_014736473.1 YidC/Oxa1 family membrane protein insertase -
  SSUST1_RS09300 (SSUST1_1908) rnpA 1860535..1860894 (-) 360 WP_014736474.1 ribonuclease P protein component -
  SSUST1_RS09305 (SSUST1_1909) argH 1860965..1862359 (-) 1395 WP_014736475.1 argininosuccinate lyase -
  SSUST1_RS09310 (SSUST1_1910) - 1862373..1863567 (-) 1195 Protein_1793 argininosuccinate synthase -
  SSUST1_RS09315 (SSUST1_1912) - 1863761..1864309 (-) 549 WP_014736476.1 hypothetical protein -
  SSUST1_RS09320 (SSUST1_1913) - 1864389..1864907 (-) 519 WP_014736477.1 transcription repressor NadR -
  SSUST1_RS09325 (SSUST1_1914) - 1865014..1865889 (-) 876 WP_014736478.1 VOC family protein -
  SSUST1_RS09330 (SSUST1_1915) - 1866011..1866511 (+) 501 WP_014736479.1 NUDIX hydrolase -
  SSUST1_RS09335 - 1866500..1866790 (-) 291 WP_024405280.1 hypothetical protein -
  SSUST1_RS11405 - 1866937..1866981 (+) 45 Protein_1799 MerR family transcriptional regulator -
  SSUST1_RS11410 (SSUST1_1916) - 1867062..1867211 (+) 150 WP_014736480.1 DUF5320 domain-containing protein -
  SSUST1_RS09340 (SSUST1_1917) gltX 1867252..1868706 (-) 1455 WP_014736481.1 glutamate--tRNA ligase -
  SSUST1_RS09345 (SSUST1_1918) - 1868778..1870058 (-) 1281 WP_014736482.1 MFS transporter -
  SSUST1_RS09350 (SSUST1_1919) - 1870150..1870809 (-) 660 WP_014736483.1 LiaF transmembrane domain-containing protein -
  SSUST1_RS09355 (SSUST1_1920) - 1870814..1871260 (-) 447 WP_012775372.1 LytTR family DNA-binding domain-containing protein -
  SSUST1_RS09360 (SSUST1_1921) tnpA 1871503..1872016 (-) 514 Protein_1805 IS200/IS605 family transposase -
  SSUST1_RS09365 (SSUST1_1923) - 1872243..1873001 (-) 759 WP_014736484.1 TIGR00266 family protein -
  SSUST1_RS09370 (SSUST1_1924) - 1873210..1873704 (-) 495 WP_014736485.1 beta-class carbonic anhydrase -
  SSUST1_RS09375 (SSUST1_1925) radA 1873828..1875195 (-) 1368 WP_024405232.1 DNA repair protein RadA Machinery gene
  SSUST1_RS09380 (SSUST1_1926) - 1875202..1875735 (-) 534 WP_014736487.1 histidine phosphatase family protein -
  SSUST1_RS09385 (SSUST1_1927) - 1875742..1876185 (-) 444 WP_014736488.1 dUTP diphosphatase -
  SSUST1_RS09390 (SSUST1_1928) - 1876205..1877191 (-) 987 WP_014736489.1 virulence RhuM family protein -
  SSUST1_RS10745 (SSUST1_1929) - 1877210..1877380 (-) 171 WP_014736490.1 hypothetical protein -
  SSUST1_RS09395 (SSUST1_1930) - 1877474..1878340 (-) 867 WP_014736491.1 helix-turn-helix domain-containing protein -
  SSUST1_RS09400 (SSUST1_1932) - 1878858..1879514 (+) 657 WP_014736493.1 geobacillin-26 family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49843.37 Da        Isoelectric Point: 6.5145

>NTDB_id=51491 SSUST1_RS09375 WP_024405232.1 1873828..1875195(-) (radA) [Streptococcus suis ST1]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGETTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSKFYLYAETNMQSIRTE
IEKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=51491 SSUST1_RS09375 WP_024405232.1 1873828..1875195(-) (radA) [Streptococcus suis ST1]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCGCCCAAGTATCTGGGCCGTTGCCC
CAACTGTGGCTCCTGGTCTTCCTTTGTCGAGGAAGTGGAGGTTGCGGAAGTCAAAAATGAGCGGGTCAGCCTGACAGGTG
AGACAACCCGACCTATGAAGCTCAATGAAGTGTCGTCCATTCAAGTGGCCCGCACTAAGACCAATATGGAGGAGTTTAAC
CGCGTCCTCGGTGGCGGTGTGGTGCCGGGCAGTCTAGTTCTCATTGGAGGCGATCCAGGGATTGGCAAATCGACCCTGCT
CTTACAGGTATCGACTCAGTTGTCCACCATTGGCACCGTCCTCTACGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAACGATTGGGCGACATCGACAGCAAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATAAAACCAGATTTCCTGATTATCGACTCTATCCAGACCATTATGAGTCCTGACATTTCTAGCGTGCAAGG
TTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAGCTTATGCAGATTGCCAAGACCAACAATATCGCAACCTTTATCGTCG
GTCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCTTGGAGCACATGGTGGATACCGTTCTTTATTTTGAGGGC
GAGCGTCAACATACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGATCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGCTTGGTCGAAGTTCTCAATCCAAGTGAGGTCTTTCTGGAAGAGCGTCTGGACGGGGCGACTGGCTCTG
CTATTGTCGTGACCATGGAGGGTACCCGCCCAATCCTTGCGGAAGTGCAGGCTCTGGTGACGCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTGGATTTCAACCGTGCCAGCTTGATTATGGCAGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGAGGTGTCAAACTGGATGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTTGCCTCCAGTTACAAGGACAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACCAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACTGTTATCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-427)

AAA domain (AAA_25)

(64-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

90.929

99.341

0.903
  radA Streptococcus pneumoniae Rx1

90.708

99.341

0.901
  radA Streptococcus pneumoniae D39

90.708

99.341

0.901
  radA Streptococcus pneumoniae R6

90.708

99.341

0.901
  radA Streptococcus pneumoniae TIGR4

90.708

99.341

0.901
  radA Streptococcus mitis SK321

90.487

99.341

0.899
  radA Bacillus subtilis subsp. subtilis str. 168

62.693

99.56

0.624

Multiple sequence alignment