Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I7845_RS25075 Genome accession   NZ_CP065824
Coordinates   5631865..5633232 (-) Length   455 a.a.
NCBI ID   WP_016973846.1    Uniprot ID   A0A7Y8ASV6
Organism   Pseudomonas tolaasii strain Pt11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5626865..5638232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7845_RS25050 (I7845_25045) - 5627013..5627669 (-) 657 WP_231124353.1 YopT-type cysteine protease domain-containing protein -
  I7845_RS25055 (I7845_25050) yjiA 5627771..5628733 (-) 963 WP_017253716.1 GTPase -
  I7845_RS25060 (I7845_25055) - 5628918..5629115 (-) 198 WP_003194308.1 YbdD/YjiX family protein -
  I7845_RS25065 (I7845_25060) - 5629131..5631197 (-) 2067 WP_016973844.1 carbon starvation CstA family protein -
  I7845_RS25070 (I7845_25065) - 5631371..5631739 (+) 369 WP_177007353.1 PilZ domain-containing protein -
  I7845_RS25075 (I7845_25070) radA 5631865..5633232 (-) 1368 WP_016973846.1 DNA repair protein RadA Machinery gene
  I7845_RS25080 (I7845_25075) - 5633268..5633807 (-) 540 WP_016973847.1 ankyrin repeat domain-containing protein -
  I7845_RS25085 (I7845_25080) katB 5633864..5635405 (-) 1542 WP_016973848.1 catalase KatB -
  I7845_RS25090 (I7845_25085) mscL 5635692..5636108 (+) 417 WP_218819644.1 large-conductance mechanosensitive channel protein MscL -
  I7845_RS25095 (I7845_25090) - 5636237..5637013 (-) 777 WP_016973850.1 ferredoxin--NADP reductase -
  I7845_RS25100 (I7845_25095) - 5637408..5638121 (+) 714 WP_016973851.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48787.28 Da        Isoelectric Point: 6.8987

>NTDB_id=514784 I7845_RS25075 WP_016973846.1 5631865..5633232(-) (radA) [Pseudomonas tolaasii strain Pt11]
MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=514784 I7845_RS25075 WP_016973846.1 5631865..5633232(-) (radA) [Pseudomonas tolaasii strain Pt11]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAATG
CGGCGCGTGGAACACCCTGACTGAAACCATGATCGAAAGCGGCGGCGCGGCAGCCCCCACCGGGCGTGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAAACCCTGGCGGAAGTCAGCGTCGAGGAAATCCCGCGTTTCTCCACCGCCTCCGGCGAACTG
GACCGCGTGCTCGGCGGCGGCCTGGTGGATGGCTCGGTGGTGCTGATCGGCGGCGACCCTGGCATCGGCAAATCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCCCTGTATGTCACTGGTGAAGAGTCCCAGCAACAAGTGG
CCATGCGTGCGCGCCGTCTGGGCTTGCCCCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACTGCGCGCATCGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACAATCTTCACCGAGCAACTGCAATCGGCGCC
GGGTGGCGTGTCCCAGGTGCGTGAAAGCGCGGCGTTGCTGGTGCGGTACGCCAAGCAGAGCGGCACGGCGATTTTTCTGG
TTGGCCACGTGACCAAAGAGGGCGCGCTGGCGGGGCCACGGGTGTTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGATGGGCGTTTGCGTTTGCTGCGGGCCGTGAAGAACCGTTTCGGCGCGGTGAACGAACTGGGTGTGTTCGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACGCGCGCTCAGGAAGAAGTCCCGGGCA
GCGTGGTGATGGCAACGTGGGAAGGTACCCGGCCAATGCTGGTGGAAGTGCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGCGTAACCCTGGGCCTGGACCAGAACCGCCTGGCGATGTTGCTCGCGGTTCTGCACCGGCACGGCGGCAT
TCCCACCCATGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTCGCGTTGA
TGGCGGCGGTGATGTCCAGTCTGCGCAACCGTCCGTTGCCTCACGACTTGCTGGTGTTCGGTGAAGTCGGCCTGTCGGGC
GAAGTGCGCCCGGTGCCCAGCGGCCAGGAACGCTTGAAAGAAGCGGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAATCGCCGCCGGGCCTGCAAATCATTGCGGTCACGCGCCTTGAGCAGGCGCTGGATGCCTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8ASV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466
  radA Streptococcus pneumoniae Rx1

46.491

100

0.466
  radA Streptococcus pneumoniae D39

46.491

100

0.466
  radA Streptococcus pneumoniae R6

46.491

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.491

100

0.466