Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   I8T81_RS17875 Genome accession   NZ_CP065820
Coordinates   3866023..3867153 (+) Length   376 a.a.
NCBI ID   WP_077164353.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S21     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3861023..3872153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS17850 (I8T81_17850) - 3861284..3861490 (-) 207 WP_039252952.1 hypothetical protein -
  I8T81_RS17855 (I8T81_17855) - 3861543..3863657 (-) 2115 WP_198071766.1 TonB-dependent copper receptor -
  I8T81_RS17860 (I8T81_17860) - 3863731..3864159 (-) 429 WP_191107143.1 DUF2946 family protein -
  I8T81_RS17865 (I8T81_17865) def 3864195..3864725 (-) 531 WP_004705924.1 peptide deformylase -
  I8T81_RS17870 (I8T81_17870) tsaP 3864848..3866002 (+) 1155 WP_077166210.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  I8T81_RS17875 (I8T81_17875) dprA 3866023..3867153 (+) 1131 WP_077164353.1 DNA-processing protein DprA Machinery gene
  I8T81_RS17880 (I8T81_17880) - 3867204..3867773 (+) 570 WP_174741068.1 L-threonylcarbamoyladenylate synthase -
  I8T81_RS17885 (I8T81_17885) - 3868164..3869084 (-) 921 WP_191107144.1 DMT family transporter -
  I8T81_RS17890 (I8T81_17890) - 3869191..3869844 (-) 654 WP_077164355.1 TetR/AcrR family transcriptional regulator -
  I8T81_RS17895 (I8T81_17895) - 3869980..3871194 (+) 1215 WP_191107145.1 MFS transporter -
  I8T81_RS17900 (I8T81_17900) - 3871215..3871979 (+) 765 WP_191107146.1 AraC family transcriptional regulator -

Sequence


Protein


Download         Length: 376 a.a.        Molecular weight: 41834.45 Da        Isoelectric Point: 6.4979

>NTDB_id=514766 I8T81_RS17875 WP_077164353.1 3866023..3867153(+) (dprA) [Acinetobacter seifertii strain S21]
MLTQLSSHHYHTLKVWYLVQHSLVSFKKIIDYFGDCEKATQPDGLAKWQSLGLHANHLKRLNEFQTAQGQTEFERLIQQV
QQHTDFILTPDDAGYPTQLLPYTDHPPVIFGKGQAQALLQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYVSSGLAYG
IDEAAHQGASVHQRTIAVTGTGLDSTYPAQNKKLAEHILAQNGAIISEFLPGTPPLQQHFPRRNRIVSGLSLGVLVVEAT
LKSGSLITANKAAEQGKIVFAIPGHIYSEFHQGCHQLIREGAILVDHPEQIIEDLALPTQWQSQQNSTEEAIVSCTPEIP
EHLINLYQSLDWVGQNIDQLVLHHSQPVSELTSSLMELELLGLCMQQSGLYLRCRS

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=514766 I8T81_RS17875 WP_077164353.1 3866023..3867153(+) (dprA) [Acinetobacter seifertii strain S21]
ATGCTTACCCAACTTTCTTCACACCATTACCACACACTTAAAGTGTGGTATTTGGTGCAACACTCGTTAGTTAGCTTCAA
AAAAATTATTGATTATTTTGGAGACTGTGAAAAAGCCACTCAACCTGATGGTTTAGCAAAGTGGCAATCTCTTGGCTTAC
ATGCTAATCACTTAAAGCGTCTAAACGAGTTTCAAACGGCGCAAGGTCAAACCGAGTTTGAACGACTTATACAACAAGTT
CAGCAACATACTGATTTTATTTTAACGCCAGATGATGCTGGCTATCCAACTCAATTACTCCCTTATACAGATCATCCACC
TGTTATTTTTGGAAAAGGTCAGGCACAAGCATTATTACAACCGCAAATTGCGATTGTCGGTAGCCGAAAACCTAGCCCAC
ATGGTCGTCAGGTGGCTTATGATTTTGCCTATTATTTAAGTGAAAAAGGTTTTTATGTAAGTAGCGGCTTGGCATATGGC
ATTGATGAAGCAGCTCATCAAGGTGCATCTGTTCATCAACGTACGATAGCGGTGACAGGTACAGGTTTAGACAGTACCTA
TCCAGCTCAAAATAAAAAATTGGCAGAACATATTTTGGCTCAAAACGGCGCCATCATTAGTGAGTTTTTACCGGGAACAC
CACCACTACAGCAGCATTTTCCACGTAGAAACCGAATTGTTAGCGGTCTGAGTTTAGGCGTATTAGTTGTAGAAGCGACT
TTAAAAAGTGGCTCCCTCATTACTGCCAATAAAGCAGCTGAGCAAGGCAAAATCGTATTTGCCATTCCCGGTCATATTTA
CAGTGAATTTCATCAAGGTTGCCATCAACTTATTCGTGAAGGTGCAATTTTAGTCGATCACCCTGAACAAATTATTGAAG
ACCTCGCCCTACCCACCCAATGGCAGAGCCAACAAAACTCAACAGAGGAGGCAATCGTTTCTTGCACCCCAGAAATTCCA
GAGCATTTGATTAATCTTTATCAGTCTTTAGACTGGGTAGGCCAAAATATTGACCAGCTTGTTTTGCATCATTCACAACC
TGTTTCTGAACTCACCTCATCATTGATGGAACTAGAACTACTCGGTTTATGTATGCAACAATCAGGATTGTATTTACGTT
GTCGTTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

91.223

100

0.912

  dprA Acinetobacter baumannii D1279779

91.223

100

0.912

  dprA Acinetobacter baylyi ADP1

71.916

100

0.729

  dprA Vibrio cholerae strain A1552

43.505

88.032

0.383