Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   I8T81_RS17400 Genome accession   NZ_CP065820
Coordinates   3767772..3768098 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter seifertii strain S21     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3762772..3773098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS17380 (I8T81_17380) - 3762866..3763492 (-) 627 WP_198071733.1 FHA domain-containing protein -
  I8T81_RS17385 (I8T81_17385) gspD 3763533..3765821 (-) 2289 WP_198071734.1 type II secretion system secretin GspD -
  I8T81_RS17390 (I8T81_17390) - 3765863..3766699 (-) 837 WP_174722725.1 type II secretion system protein N -
  I8T81_RS17395 (I8T81_17395) gspN 3766699..3767442 (-) 744 WP_004699190.1 type II secretion system protein N -
  I8T81_RS17400 (I8T81_17400) hns 3767772..3768098 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  I8T81_RS17405 (I8T81_17405) - 3768292..3768732 (-) 441 WP_004699193.1 thioesterase family protein -
  I8T81_RS17410 (I8T81_17410) - 3768740..3769933 (-) 1194 WP_019457025.1 hypothetical protein -
  I8T81_RS17415 (I8T81_17415) - 3769943..3770782 (-) 840 WP_004699197.1 hypothetical protein -
  I8T81_RS17420 (I8T81_17420) - 3770791..3771558 (-) 768 WP_198071735.1 uroporphyrinogen-III synthase -
  I8T81_RS17425 (I8T81_17425) hemC 3771563..3772480 (-) 918 WP_198071736.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=514760 I8T81_RS17400 WP_002053185.1 3767772..3768098(-) (hns) [Acinetobacter seifertii strain S21]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=514760 I8T81_RS17400 WP_002053185.1 3767772..3768098(-) (hns) [Acinetobacter seifertii strain S21]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACTACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991