Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   I8T81_RS16905 Genome accession   NZ_CP065820
Coordinates   3655937..3658165 (+) Length   742 a.a.
NCBI ID   WP_198071696.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain S21     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3650937..3663165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8T81_RS16875 (I8T81_16875) lnt 3650982..3652541 (+) 1560 WP_198071695.1 apolipoprotein N-acyltransferase -
  I8T81_RS16880 (I8T81_16880) - 3652543..3652881 (-) 339 WP_019456905.1 tRNA-binding protein -
  I8T81_RS16885 (I8T81_16885) - 3653114..3653374 (+) 261 WP_019456904.1 DUF2798 domain-containing protein -
  I8T81_RS16890 (I8T81_16890) - 3653434..3653778 (-) 345 WP_019456903.1 hypothetical protein -
  I8T81_RS16895 (I8T81_16895) gspG 3654044..3654559 (-) 516 WP_017393987.1 type II secretion system major pseudopilin GspG -
  I8T81_RS16900 (I8T81_16900) gspF 3654583..3655788 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  I8T81_RS16905 (I8T81_16905) priA 3655937..3658165 (+) 2229 WP_198071696.1 primosomal protein N' Machinery gene
  I8T81_RS16910 (I8T81_16910) - 3658241..3660082 (+) 1842 WP_198071697.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  I8T81_RS16915 (I8T81_16915) - 3660248..3661123 (+) 876 WP_004710781.1 Hsp33 family molecular chaperone HslO -
  I8T81_RS16920 (I8T81_16920) - 3661261..3661872 (+) 612 WP_198071698.1 LysE family translocator -
  I8T81_RS16925 (I8T81_16925) - 3662023..3662985 (+) 963 WP_019456898.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84082.94 Da        Isoelectric Point: 8.5625

>NTDB_id=514757 I8T81_RS16905 WP_198071696.1 3655937..3658165(+) (priA) [Acinetobacter seifertii strain S21]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGNFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPTPIQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYHLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAILIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=514757 I8T81_RS16905 WP_198071696.1 3655937..3658165(+) (priA) [Acinetobacter seifertii strain S21]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTACGTCAGGGTAAACCCATGGATGTGTTATTTCATTTATGGAAAATCATTC
CATGTGACAATGTTGAAGCTCTGCTAAAACGCTCAATCAAACAACAAGACGCTTATCAAATTTTAAAATTACACCCTGCC
GGAACTACAGAAAATATTCTTAATTTGAGTGGTGTAGAAACTGCGACACTTAAAGCACTTCAAAAGAAAGGACTGGTAGA
TTGTACGCTTGAGCCGCATGACTTTAGCCCAACACCCATACAATTGGCTCAAATGCCACTCACGCTAAATGATGACCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGTTAAAACAAGGTAAGCAAGTCCTAGTATTGGTTCCTGAAATTGGCTT
AACCCCTCAAACTATTTCGCGCTTTAAGTCTCGTTTTAACTGCGATATTGCTTTATTGCATTCAGGCTTAAATGACTCTA
AACGCTTACAAGCATGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGGACTCGTTCCGCCATTTATACGCCG
CTGCCACGTCTGGGCCTCATCATTTTAGATGAAGAACACGACCTGTCTTATAAGCAGCAAGAAGGCTTCCGTTATCATGC
GCGTGATGTCGCACTGTACCGAGGCCACTTACAAAACTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGCATCGACAGTT
ATCACTTGGTAGAAACTGGTAAGTTAACTTCACTGCAACTTAACCAACGTGCAGGCCACGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAGCATGGTATTAGTCAGCCTTTAATCGAGCAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAATCGTCGTGGCTATGCGCCTGTATTGGTTTGTGAAAGCTGTGGATGGCAAGCAA
ATTGTCCACATTGCGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTATTTGCATTGTCACCACTGTGGCACAGTT
CATCGCTTGCCAGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACGTTAGGTGCAGGAACAGCCAAAGTTGAAGA
GCACTTACAAGAATTATTTCCAGACTATGATGTGATTCGGGTCGATCGTGACAGCACCAGTCGTGTCGGTAGTTGGCAAA
AAATCTATGATCGTATTCATCAAAACAAACCAACAATTTTGCTTGGTACTCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCGGGTTTACTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCACA
GTTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ATCCTTTACTCACCACACTCATCGAAAAAGATTATCGGGCGGTCGCGAAACAAACATTAGCTGAACGAAAAGTTGCATTA
CTGCCGCCTTATCGTTATGCAATCTTAATTCGTGCTGAGTCGAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
TGCCGAACAGCTTCGCCAAATTGCAGGTGATATTGTTGATATTTGGGGGCCGATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCCGACCGTGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCACCAAGACAGCATCAACTTAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.035

100

0.97