Detailed information NTG0514700

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KYX12_RS04935
• Genome accession: NZ_CP079735
• Coordinates: 1028008..1029000 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain GB2005
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1023008..1034000

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KYX12_RS04905 (KYX12_04905)	ispD	1023069..1023779 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
KYX12_RS04910 (KYX12_04910)	ispF	1023779..1024258 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KYX12_RS04915 (KYX12_04915)	truD	1024255..1025304 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
KYX12_RS04920 (KYX12_04920)	surE	1025285..1026046 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
KYX12_RS04925 (KYX12_04925)	pcm	1026040..1026666 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
KYX12_RS04930 (KYX12_04930)	nlpD	1026851..1027945 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
KYX12_RS04935 (KYX12_04935)	rpoS	1028008..1029000 (+)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
KYX12_RS04940 (KYX12_04940)	ygbN	1029094..1030458 (-)	1365	WP_000104441.1	GntP family transporter	-
KYX12_RS04945 (KYX12_04945)	ygbM	1030547..1031323 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
KYX12_RS04950 (KYX12_04950)	ygbL	1031328..1031966 (-)	639	WP_001278991.1	aldolase	-
KYX12_RS04955 (KYX12_04955)	otnK	1032058..1033224 (-)	1167	WP_001393459.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=514700 KYX12_RS04935 WP_000081588.1 1028008..1029000(+) (rpoS) [Escherichia coli strain GB2005]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=514700 KYX12_RS04935 WP_000081588.1 1028008..1029000(+) (rpoS) [Escherichia coli strain GB2005]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715