Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I7804_RS16195 Genome accession   NZ_CP065800
Coordinates   3859580..3860968 (-) Length   462 a.a.
NCBI ID   WP_022753479.1    Uniprot ID   -
Organism   Butyrivibrio fibrisolvens strain ASCUSDY19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3854580..3865968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7804_RS16175 - 3854772..3856151 (-) 1380 WP_248404179.1 carbohydrate ABC transporter permease -
  I7804_RS16180 - 3856235..3857581 (-) 1347 WP_248404180.1 extracellular solute-binding protein -
  I7804_RS16185 - 3857969..3859057 (+) 1089 WP_022753480.1 LacI family DNA-binding transcriptional regulator -
  I7804_RS16195 radA 3859580..3860968 (-) 1389 WP_022753479.1 DNA repair protein RadA Machinery gene
  I7804_RS16200 - 3861104..3861514 (-) 411 WP_027205354.1 hypothetical protein -
  I7804_RS16205 - 3861658..3864237 (-) 2580 WP_248404181.1 ATP-dependent Clp protease ATP-binding subunit -
  I7804_RS16210 - 3864358..3864732 (-) 375 WP_027205356.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50354.99 Da        Isoelectric Point: 6.8182

>NTDB_id=514699 I7804_RS16195 WP_022753479.1 3859580..3860968(-) (radA) [Butyrivibrio fibrisolvens strain ASCUSDY19]
MPAKIKTAFFCQNCGYESSKWMGQCPSCHEWNTMVEEMVKPEPKNKRVALGSGMSVHAASSVDAAPKSLSQIELGQEDRS
DTHIGELNRVLGGGLVRGSLTLVGGDPGIGKSTLLLQVARNMSDDGHAILYISGEESLRQIKLRANRIGTFTDNLKFLCE
TNLSTIEAVITKDKPEIVIIDSIQTMFNEDVSSAPGSVSQVRETTAVLLRIAKSMNVSIFIVGHVTKEGTVAGPRVLEHM
VDTVLYFEGDRHASYRILRGVKNRFGSTNEIGVFEMRQDGLAEVANPSEFMLDGRPEDASGSIVTCSVEGTRPILLEIQA
LVCRTSFGFPRRQANGTDYNRVNLLMAVLEKRVGLQMADCDAYVNLAGGMKLQEPALDLGICLAVISSFKNKPIDSSVVA
FGEVGLSGEVRSVSMTEQRVMEAKKLGFKTIILPKAYENKLKDTKGLEIIGVRSLQDAMKIF

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=514699 I7804_RS16195 WP_022753479.1 3859580..3860968(-) (radA) [Butyrivibrio fibrisolvens strain ASCUSDY19]
ATGCCTGCTAAGATTAAAACAGCATTTTTTTGTCAGAACTGCGGATATGAATCATCTAAGTGGATGGGACAGTGTCCGTC
ATGTCATGAATGGAATACGATGGTTGAGGAGATGGTCAAGCCTGAGCCCAAGAATAAAAGAGTAGCACTTGGGAGTGGGA
TGTCTGTTCATGCAGCTTCATCTGTAGATGCTGCTCCAAAATCATTATCTCAGATAGAATTAGGTCAAGAAGACAGAAGT
GATACACATATAGGTGAACTTAACAGAGTACTTGGAGGGGGACTTGTAAGAGGTTCCCTTACACTTGTGGGAGGAGATCC
GGGAATAGGCAAGTCAACACTTCTTTTGCAGGTTGCCAGGAATATGTCTGATGACGGACATGCTATCTTGTATATATCAG
GAGAGGAATCATTAAGGCAGATAAAGCTAAGAGCCAATCGTATCGGAACTTTTACAGATAATCTTAAGTTTTTGTGCGAG
ACCAACCTTTCTACAATAGAGGCGGTTATCACCAAGGATAAACCTGAGATAGTGATCATAGATTCTATTCAGACTATGTT
CAATGAAGATGTATCATCCGCGCCGGGAAGCGTATCACAGGTAAGAGAGACAACGGCAGTTCTTCTTCGTATAGCCAAGA
GCATGAATGTATCAATATTTATAGTAGGGCATGTCACCAAGGAAGGAACAGTAGCCGGTCCCAGAGTTCTTGAACATATG
GTTGATACTGTGCTTTATTTTGAAGGTGATCGACATGCATCCTATAGGATACTTAGAGGAGTCAAGAACAGGTTCGGTTC
GACCAATGAGATAGGTGTATTTGAAATGAGACAGGACGGTCTTGCAGAAGTTGCCAATCCGTCTGAATTCATGCTGGACG
GAAGACCAGAAGATGCCAGCGGAAGCATAGTTACATGTTCAGTAGAAGGTACAAGGCCGATACTACTTGAGATACAGGCG
CTTGTATGTCGTACAAGTTTTGGATTCCCAAGAAGGCAGGCCAATGGTACAGATTATAACAGAGTAAACCTCCTTATGGC
TGTTCTTGAGAAAAGAGTCGGACTTCAGATGGCAGATTGCGATGCATATGTAAATCTTGCAGGAGGAATGAAGCTTCAGG
AGCCTGCGCTAGACCTTGGAATATGCCTTGCGGTTATATCAAGCTTTAAGAATAAACCTATAGATTCATCTGTTGTTGCA
TTTGGTGAAGTGGGACTATCCGGAGAAGTCAGAAGCGTAAGTATGACTGAGCAAAGGGTTATGGAAGCTAAGAAGCTGGG
ATTTAAAACCATAATCCTTCCTAAAGCTTATGAGAATAAGCTCAAAGATACAAAAGGGCTTGAGATCATAGGCGTAAGAT
CACTTCAGGATGCAATGAAGATATTCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-36)

Subunit ChlI of Mg-chelatase (ChlI)

(353-436)

AAA domain (AAA_25)

(76-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.86

99.134

0.574
  radA Streptococcus pneumoniae Rx1

52.183

99.134

0.517
  radA Streptococcus pneumoniae D39

52.183

99.134

0.517
  radA Streptococcus pneumoniae R6

52.183

99.134

0.517
  radA Streptococcus pneumoniae TIGR4

52.183

99.134

0.517
  radA Streptococcus mitis NCTC 12261

51.965

99.134

0.515
  radA Streptococcus mitis SK321

51.965

99.134

0.515