Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KX728_RS07720 Genome accession   NZ_CP079724
Coordinates   1574817..1575413 (+) Length   198 a.a.
NCBI ID   WP_000248759.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1569817..1580413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS07695 (KX728_07690) - 1570723..1572168 (-) 1446 WP_215804352.1 cell division site-positioning protein MapZ family protein -
  KX728_RS07700 (KX728_07695) - 1572181..1573338 (-) 1158 WP_215804351.1 class I SAM-dependent RNA methyltransferase -
  KX728_RS07710 (KX728_07705) gpsB 1573824..1574153 (-) 330 WP_000146523.1 cell division regulator GpsB -
  KX728_RS07715 (KX728_07710) - 1574223..1574750 (-) 528 WP_215804350.1 DUF1273 domain-containing protein -
  KX728_RS07720 (KX728_07715) recU 1574817..1575413 (+) 597 WP_000248759.1 Holliday junction resolvase RecU Machinery gene
  KX728_RS07725 (KX728_07720) pbp1a 1575410..1577578 (+) 2169 WP_001041840.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23061.43 Da        Isoelectric Point: 9.8088

>NTDB_id=514653 KX728_RS07720 WP_000248759.1 1574817..1575413(+) (recU) [Streptococcus oralis strain 34]
MVNYPHKISSQKRQAPLSQTKNFANRGMSFEKMINATNDYYLSHGLAVIHKKPTPIQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYDGYYIDFEAKETRQKHAIPMKNFHPHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAIDLIRFYHQDKGQK
SMPLGYIRENGYRIEPGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=514653 KX728_RS07720 WP_000248759.1 1574817..1575413(+) (recU) [Streptococcus oralis strain 34]
ATGGTCAACTATCCACATAAAATTTCATCTCAAAAGAGGCAAGCACCCCTGTCACAAACTAAAAATTTCGCAAATCGGGG
AATGTCTTTTGAAAAGATGATCAATGCTACGAACGACTACTATTTGTCGCATGGGTTAGCTGTTATTCACAAGAAACCGA
CTCCCATCCAAATTGTACGTGTTGATTATCCCCAACGAAGTCGTGCCAAGATTGTTGAAGCCTACTTTAGACAAGCCTCA
ACTACTGACTATTCAGGGGTTTATGATGGATACTACATCGACTTTGAAGCAAAGGAAACCAGGCAAAAACATGCGATACC
GATGAAGAATTTTCATCCCCATCAGATCCAGCATATGGAACAAGTCCTTGCCCAGCAAGGAATCTGCTTTGTACTCCTTC
ACTTTTCTTCTCAGCAAGAAACCTACTTATTACCGGCTATTGACCTCATCCGTTTCTATCATCAAGATAAGGGACAGAAG
TCAATGCCACTTGGATATATTCGAGAAAATGGATATAGGATTGAGCCTGGTGCCTTTCCTCAAATTCCCTACCTCGACAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.49