Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   KX728_RS07625 Genome accession   NZ_CP079724
Coordinates   1555648..1558017 (+) Length   789 a.a.
NCBI ID   WP_215804363.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1550648..1563017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS07600 (KX728_07595) mutS/mutS2 1550648..1552984 (-) 2337 WP_215804366.1 endonuclease MutS2 Machinery gene
  KX728_RS07605 (KX728_07600) - 1553085..1553633 (-) 549 WP_215804365.1 CvpA family protein -
  KX728_RS07610 (KX728_07605) zapA 1553630..1553932 (-) 303 WP_000002028.1 cell division protein ZapA -
  KX728_RS07615 (KX728_07610) rnhC 1554019..1554900 (+) 882 WP_215804364.1 ribonuclease HIII -
  KX728_RS07620 (KX728_07615) lepB 1554904..1555518 (+) 615 WP_001083992.1 signal peptidase I -
  KX728_RS07625 (KX728_07620) recD/recD2/recDB 1555648..1558017 (+) 2370 WP_215804363.1 ATP-dependent RecD-like DNA helicase Machinery gene
  KX728_RS07630 (KX728_07625) tig 1558065..1559348 (-) 1284 WP_215804362.1 trigger factor -
  KX728_RS07635 (KX728_07630) - 1559439..1560095 (-) 657 WP_215804361.1 DNA alkylation repair protein -
  KX728_RS07640 (KX728_07635) vraR 1560096..1560728 (-) 633 WP_215804360.1 response regulator transcription factor Regulator
  KX728_RS07645 (KX728_07640) - 1560738..1561736 (-) 999 WP_215804359.1 sensor histidine kinase -
  KX728_RS07650 (KX728_07645) liaF 1561733..1562431 (-) 699 WP_215804358.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88462.29 Da        Isoelectric Point: 4.5907

>NTDB_id=514650 KX728_RS07625 WP_215804363.1 1555648..1558017(+) (recD/recD2/recDB) [Streptococcus oralis strain 34]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAENFDDFEIIVTGTMADVIEGEDYTFWGQIIQHSKYGEQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDSYGENTIDEILEHPEKLESIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDIVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELSHLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSQNLETIHKY
IATVEQELGIQYDTIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQISLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVSFEATQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVIYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFSDLIENNIEESKQAFSETATASDSEQSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=514650 KX728_RS07625 WP_215804363.1 1555648..1558017(+) (recD/recD2/recDB) [Streptococcus oralis strain 34]
ATGGAAGTTTATTTTTCAGGCACTATTGAACGGATTATTTTTGAAAATCCCAGTAATTTTTATCGCATTCTCCTCCTAGA
TATCGAAGATACCAATGCGGAGAACTTTGACGATTTTGAAATCATTGTTACAGGAACTATGGCGGACGTGATTGAGGGTG
AAGACTACACTTTTTGGGGGCAAATCATTCAGCACTCCAAGTATGGAGAACAGCTACAGATCAGTCGTTATGAGCGAGCA
AAACCAACTAGCAAGGGCCTCGTCAAGTACTTTTCTAGCAGTCATTTCAAGGGAATTGGTCTCAAAACTGCTCAGAAAAT
CGTCGATAGCTATGGTGAAAATACCATTGACGAAATTCTGGAACATCCTGAAAAGCTAGAAAGTATTGCAGGACTCTCTG
CCAAAAACCGTGAGGCTTTTGTTTCCACCCTTCGTCTTAACTACGGAACCGAGATGGTCTTAGCTAAACTAGCTAACTAC
GGCATTCCCAATAAACTGGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACGCTGGATATTGTCGAAAACTATCCCTA
CCAACTGGTTGAAGATATCAAAGGATTGGGTTTTACCATTGCAGACCAATTGGCTGCCGAACTAGGCATCGAAAGTCAAG
CTCCCGAGCGCTTCCGTGCTGGCCTTGTCCATAGTCTCTTTCAAGGTTGTATGGATACAGGCGATACCTATATGGAAGCC
CGAGATTTGCTGGAACAAACCCTGACTCTCCTCGAGTCTTCCCGTCCTGTGGAACTAGACCCCAGTCAAGTAGCTCAGGA
ATTATCTCATTTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAACAGCCTCTTTTTCGCTGAAG
AAGGCATTCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAGCAGAAGAGTCAGAACTTAGAAACCATTCACAAGTAT
ATCGCTACTGTCGAGCAAGAACTGGGCATTCAGTACGATACCATTCAAAAACAGGCTATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCTGGTACAGGTAAGACGACTGTTATCAATGGAATTATCGCTGTTTATGCCCTTTTAG
AAGGGCTTGATCTCAGGAAGAAAAGCAACCTGCCGATTCTTCTCGCTGCTCCAACTGGTCGAGCGGCTCGGCGCATGAAT
GAATTAACAGGTTTGCCTAGCGCGACCATACACCGTCATTTGGGGATGACAGGAGACGATGATACCAGTCATCTGGAAGA
TTATCTGGATGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTGGACACTTGGCTAGCTAACCAACTCTTCTCCAACA
TCTCTTCTAACAGTAAAATTCTCATCGTGGGGGATAGCGATCAGCTACCTTCTGTTAGTCCCGGACAAGTCCTTGCTGAC
CTGCTCCAGATATCCCTGATTCCGCAGACCCGCTTGGAACGGATTTACCGTCAGAGCGAAGAATCAACTATCGTTACCTT
GGCGAGTCAAATTCGACAAGGCATCTTGCCAGCTGACTTTACCCAGAAAAAGGCAGACCGCTCCTACTTTGAAATCGCTA
GCGGTCATATCCCAGCTACGATTGAGAAAATTCTTGGTGCTGCCCTCAGAAGTGGCATTCCGGCTCGAGATATTCAGGTG
CTAGCGCCTATGTATCGAGGTACTGCTGGTATTGACGCCATCAACCAACTCATGCAAGACCTGCTCAATCCTCAGCAAAA
GGGGCAAGTTAGCTTTGAAGCCACTCAGTGTCACTATCGAACAGGGGACAAGGTTATTCACCTAGTCAACGACGCTGAAG
TCAATGTCTTTAATGGAGACCTAGGCTACATCACAGACCTAATTCCTGGTAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTCATCTACCCACGTAACGAATGGTACAAAATTCGACTAGCCTATGCCATGAGTAT
CCATAAGTCTCAGGGAAGTGAGTTTCCTGTTGTCATCCTGCCCATCACCAGTTCTAGCAAGCGCATGCTGGAGCGAAATC
TCATCTACACAGCCATTACACGGGCCAAAAGCAAGCTCATCCTTCTCGGTGAATTACAGGCCTTTGACTATGCAGTCAAG
CATATCGGGACTGCCCGCAAGACCTATCTGATTGAGCGTTTCAGTGATTTAATTGAAAATAATATTGAAGAAAGTAAACA
AGCCTTCTCTGAAACTGCCACAGCAAGTGACTCTGAACAATCCTACATCCTCACCGAGGAAAACTGGTCTAGTATTCCCG
CTATGATTGGAATTACAGATGCTGACTTAAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

AAA domain (AAA_30)

(332-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.888

95.311

0.399