Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   I7830_RS08530 Genome accession   NZ_CP065795
Coordinates   1660550..1661521 (+) Length   323 a.a.
NCBI ID   WP_025905417.1    Uniprot ID   A0AAJ4SJJ8
Organism   Mammaliicoccus sciuri strain GDH8C110P     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1640408..1659857 1660550..1661521 flank 693


Gene organization within MGE regions


Location: 1640408..1661521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7830_RS08450 (I7830_08450) - 1640408..1641223 (-) 816 WP_103362198.1 ZIP family metal transporter -
  I7830_RS08455 (I7830_08455) - 1641309..1643180 (+) 1872 WP_103362199.1 ABC-F family ATP-binding cassette domain-containing protein -
  I7830_RS08460 (I7830_08460) recQ 1643203..1644981 (+) 1779 WP_198051909.1 DNA helicase RecQ -
  I7830_RS08465 (I7830_08465) - 1645070..1646032 (+) 963 WP_025905405.1 ABC transporter ATP-binding protein -
  I7830_RS08470 (I7830_08470) - 1646029..1647543 (+) 1515 WP_025905406.1 ABC transporter permease/substrate-binding protein -
  I7830_RS08475 (I7830_08475) hisC 1647646..1648713 (+) 1068 WP_198051910.1 histidinol-phosphate transaminase -
  I7830_RS08480 (I7830_08480) - 1648778..1649359 (+) 582 WP_025905408.1 5' nucleotidase, NT5C type -
  I7830_RS08490 (I7830_08490) - 1650803..1652305 (-) 1503 WP_198051912.1 peptide MFS transporter -
  I7830_RS08495 (I7830_08495) - 1652822..1654336 (-) 1515 WP_103362202.1 peptide MFS transporter -
  I7830_RS08500 (I7830_08500) queF 1654631..1655131 (-) 501 WP_025905411.1 preQ(1) synthase -
  I7830_RS08505 (I7830_08505) - 1655131..1656015 (-) 885 WP_025905412.1 DMT family transporter -
  I7830_RS08510 (I7830_08510) nrdI 1656391..1656789 (+) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  I7830_RS08515 (I7830_08515) nrdE 1656752..1658857 (+) 2106 WP_025905414.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  I7830_RS08520 (I7830_08520) nrdF 1658886..1659857 (+) 972 WP_025905415.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  I7830_RS08525 (I7830_08525) - 1660007..1660423 (+) 417 WP_107565270.1 FixH family protein -
  I7830_RS08530 (I7830_08530) ceuB 1660550..1661521 (+) 972 WP_025905417.1 ABC transporter permease Machinery gene

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35476.97 Da        Isoelectric Point: 10.7243

>NTDB_id=514635 I7830_RS08530 WP_025905417.1 1660550..1661521(+) (ceuB) [Mammaliicoccus sciuri strain GDH8C110P]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=514635 I7830_RS08530 WP_025905417.1 1660550..1661521(+) (ceuB) [Mammaliicoccus sciuri strain GDH8C110P]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTAATCATATTATTAGTAATTGCAACGTTCTTCTCTATTTTTATAGGTGT
TTCAGAAGTAAAACCTTTACATATATTAAATTTAACTGACGAACAGAAGAACATTTTAGTGTCGAGTAGAATTCCGAGAA
CAGTCAGTATTATTATTTCAGGGAGTTCATTAGCTATTTGTGGACTGATTATGCAACAGTTAACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCGAGATTAGGTATATTAATTTCTCTTATCGCGTTTCCAGAAGCCAATAT
ACTACTTAAATTATTATTTGCTACATTATTAAGCTTATTTGGAACAATGCTATTTATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTTATACCTTTAGTTGGTATCATGCTCGGAAACATTGTGTCGAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
CTATATTAGTATTCCGTTATTGATTTTAGCGTTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTCA
GTGTGAATTTAGGACTTAATTATCAAAAAGTTGTCAATATTGGACTTATCATTGCATCAATTATTACAGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGATTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTGAAAAA
TGCATTGCCACATACAGCAGTATTTGGTGCATTGTTTGTGATGATTTGTGATGTCATAGGAAGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATAGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502