Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I7830_RS06845 Genome accession   NZ_CP065795
Coordinates   1326216..1327586 (+) Length   456 a.a.
NCBI ID   WP_025904845.1    Uniprot ID   A0A2T4RU06
Organism   Mammaliicoccus sciuri strain GDH8C110P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1321216..1332586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I7830_RS06825 (I7830_06825) - 1321570..1322031 (+) 462 WP_025904841.1 CtsR family transcriptional regulator -
  I7830_RS06830 (I7830_06830) - 1322046..1322582 (+) 537 WP_025904842.1 UvrB/UvrC motif-containing protein -
  I7830_RS06835 (I7830_06835) - 1322583..1323590 (+) 1008 WP_025904843.1 protein arginine kinase -
  I7830_RS06840 (I7830_06840) - 1323607..1326060 (+) 2454 WP_037589909.1 ATP-dependent Clp protease ATP-binding subunit -
  I7830_RS06845 (I7830_06845) radA 1326216..1327586 (+) 1371 WP_025904845.1 DNA repair protein RadA Machinery gene
  I7830_RS06850 (I7830_06850) - 1327609..1328667 (+) 1059 WP_103360791.1 PIN/TRAM domain-containing protein -
  I7830_RS06855 (I7830_06855) ispD 1328669..1329355 (+) 687 WP_103360792.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I7830_RS06860 (I7830_06860) ispF 1329348..1329827 (+) 480 WP_103360793.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  I7830_RS06865 (I7830_06865) gltX 1329843..1331297 (+) 1455 WP_107572783.1 glutamate--tRNA ligase -
  I7830_RS06870 (I7830_06870) cysE 1331551..1332192 (+) 642 WP_025904850.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50477.24 Da        Isoelectric Point: 7.7103

>NTDB_id=514634 I7830_RS06845 WP_025904845.1 1326216..1327586(+) (radA) [Mammaliicoccus sciuri strain GDH8C110P]
MAKKKVIFECLACGYQSPKWMGKCPNCGAWNQMEESIEHKETKGPKNTFKSDVPAQKIEKLKDVKEEDTPRIKTKINEFN
RVLGGGVVEGSLVLIGGDPGIGKSTLLLQICAALSQQKNVLYVSGEESVRQTKLRAERLVEDSGELNVYAETNLEIIHSM
VQKEKPDVLVIDSIQTVFHPEVTSAPGSVSQVRECTQNLMHIAKQMNIATFIVGHVTKDGQIAGPRLLEHMVDTVLYFEG
DTHHAYRILRAVKNRFGSTNEMGIFEMKQTGLNEVKNPSEMFLEERTKHVSGSTIVATMEGTRPILVEVQALVTPTTFHN
PRRMATGIDHNRLSLLMAVLEKKENFLLQQQDAYIKIAGGVKLSEPAVDLSIVIAIASSFQDKPTKGDDCFVGEVGLTGE
VRRVARIDQRVQEAAKLGFKRIIIPKNNIKGLEFPEGTEVIGVSTTREALKIAFNA

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=514634 I7830_RS06845 WP_025904845.1 1326216..1327586(+) (radA) [Mammaliicoccus sciuri strain GDH8C110P]
ATGGCCAAAAAGAAAGTAATATTTGAGTGTTTAGCCTGCGGATATCAATCTCCAAAATGGATGGGGAAATGCCCTAATTG
TGGTGCATGGAACCAAATGGAAGAATCAATAGAACATAAAGAAACTAAAGGTCCTAAAAATACATTCAAGTCAGATGTAC
CCGCACAAAAAATAGAAAAATTAAAAGACGTTAAAGAAGAAGATACACCTAGAATTAAGACAAAAATCAATGAATTTAAT
CGCGTATTAGGTGGCGGTGTTGTAGAAGGTTCGCTTGTACTCATTGGTGGTGACCCTGGTATTGGTAAATCCACATTATT
ATTACAAATTTGTGCGGCTTTATCTCAACAAAAAAATGTCTTATATGTTTCAGGTGAAGAATCTGTAAGACAAACAAAAT
TAAGAGCTGAAAGATTAGTTGAAGATTCAGGAGAATTAAATGTTTATGCTGAAACGAATTTAGAGATTATACATAGTATG
GTTCAAAAAGAAAAACCAGATGTATTAGTAATAGATTCCATTCAAACTGTCTTCCACCCTGAAGTCACTTCTGCGCCAGG
TTCTGTTTCTCAAGTTAGAGAATGTACACAAAATTTAATGCATATCGCAAAACAAATGAATATTGCTACATTTATTGTTG
GACACGTAACAAAAGATGGACAAATTGCTGGTCCACGTTTATTAGAACATATGGTTGATACAGTATTATATTTTGAAGGC
GATACACATCATGCATACAGAATATTAAGAGCAGTTAAAAACCGTTTTGGTTCAACAAATGAAATGGGTATTTTTGAAAT
GAAGCAAACGGGTCTTAACGAAGTTAAAAATCCGTCTGAAATGTTCTTAGAAGAAAGAACGAAACATGTATCGGGTTCGA
CTATTGTCGCAACTATGGAAGGTACGAGACCTATTTTAGTTGAGGTACAAGCTTTAGTGACGCCAACGACTTTTCATAAT
CCACGAAGAATGGCAACAGGTATTGATCATAATAGATTAAGCTTATTGATGGCTGTATTAGAGAAGAAAGAGAATTTCTT
ATTACAACAACAAGACGCATATATCAAAATTGCCGGTGGTGTAAAATTAAGTGAACCCGCTGTAGATTTAAGTATTGTTA
TCGCGATAGCTTCAAGTTTCCAAGATAAACCTACTAAAGGTGATGATTGTTTCGTAGGTGAGGTTGGCTTAACAGGTGAA
GTAAGAAGGGTTGCTAGAATTGATCAACGTGTACAAGAAGCGGCTAAATTAGGATTTAAACGTATTATCATACCTAAAAA
TAATATTAAAGGTTTAGAATTCCCTGAAGGTACAGAAGTTATTGGTGTATCAACAACAAGAGAAGCATTGAAAATTGCTT
TTAATGCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(349-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4RU06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.721

100

0.66
  radA Streptococcus pneumoniae Rx1

61.894

99.561

0.616
  radA Streptococcus pneumoniae D39

61.894

99.561

0.616
  radA Streptococcus pneumoniae R6

61.894

99.561

0.616
  radA Streptococcus pneumoniae TIGR4

61.894

99.561

0.616
  radA Streptococcus mitis NCTC 12261

61.894

99.561

0.616
  radA Streptococcus mitis SK321

61.894

99.561

0.616