Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   KX728_RS04170 Genome accession   NZ_CP079724
Coordinates   828995..830662 (+) Length   555 a.a.
NCBI ID   WP_215804729.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 823995..835662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS04140 (KX728_04135) udk 824587..825225 (+) 639 WP_001181372.1 uridine kinase -
  KX728_RS04145 (KX728_04140) xseA 825354..826694 (+) 1341 WP_000417445.1 exodeoxyribonuclease VII large subunit -
  KX728_RS04150 (KX728_04145) - 826672..826884 (+) 213 WP_215804731.1 exodeoxyribonuclease VII small subunit -
  KX728_RS04155 (KX728_04150) - 826881..827756 (+) 876 WP_215804730.1 polyprenyl synthetase family protein -
  KX728_RS04160 (KX728_04155) - 827749..828564 (+) 816 WP_070697266.1 TlyA family RNA methyltransferase -
  KX728_RS04165 (KX728_04160) - 828557..828988 (+) 432 WP_001034390.1 arginine repressor -
  KX728_RS04170 (KX728_04165) recN 828995..830662 (+) 1668 WP_215804729.1 DNA repair protein RecN Machinery gene
  KX728_RS04175 (KX728_04170) - 830663..831391 (+) 729 WP_215804728.1 metallophosphoesterase family protein -
  KX728_RS04180 (KX728_04175) lepA 831470..833293 (+) 1824 WP_215804727.1 translation elongation factor 4 -
  KX728_RS04185 (KX728_04180) - 833438..834061 (+) 624 WP_215804726.1 hypothetical protein -
  KX728_RS04190 (KX728_04185) dprA/cilB/dalA 834143..834991 (+) 849 WP_215804725.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62730.07 Da        Isoelectric Point: 4.4858

>NTDB_id=514615 KX728_RS04170 WP_215804729.1 828995..830662(+) (recN) [Streptococcus oralis strain 34]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNLMLGARATTDVIRYGAPKAEIEGLFSVENSRLLQELF
DEQGLEMGDEIIIRREILQNGRSVSRVNGQMVNLSVLRAIGQHLVDIHGQHDQEELMRPQLHIQMLDEFGDAAFLDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYTMLDNEE
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDITKRLEDIIDDLDFDGNRLMQVENRLDLLNTITRKYGGTV
DDVLLYFAKITDEYNLLTGNNLSSEDMEAELKKLEVNLVDLAGQLASARHDLAQQLEAEIKQELQDLYMEKAQFQVRFSK
SKFSREGNEAVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLTLEERVEEVAKMLAGENVTEAALTQARELLQTREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=514615 KX728_RS04170 WP_215804729.1 828995..830662(+) (recN) [Streptococcus oralis strain 34]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCGATTTCCCTCAATTTTGAAAAGGGTATGACTGTTTT
AACCGGGGAAACGGGTGCTGGAAAGTCTATTATTATCGACGCTATGAATCTCATGTTGGGGGCTCGTGCAACGACAGACG
TTATTCGTTACGGTGCTCCTAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAAAATAGTCGCCTTTTACAGGAACTTTTT
GATGAGCAAGGTTTGGAAATGGGTGATGAAATTATCATCCGGCGTGAAATTCTGCAAAATGGTCGTAGTGTTAGTCGCGT
GAATGGCCAGATGGTCAATCTTTCTGTCTTGCGTGCTATTGGGCAACACCTTGTGGATATCCATGGTCAGCATGACCAAG
AAGAGTTAATGCGTCCTCAACTGCACATTCAGATGTTGGATGAGTTTGGTGATGCTGCTTTCTTGGACTTGAAGGAGACC
TATCAGACGAGCTTTGATGCCTATCGCAAAATGCGTAAGCAGGTTTTGGAAGTCAAGAAAAACCAGCAGGAACACAAGGC
TCGTATTGAGATGTTGGAATTTCAAATGGCAGAGATTGAGGCTGCAAACTTGCAGGCTGGTGAAGACTTGGCTCTCAACC
AAGAACGAGATAAACTCCTCAATCATAAAAATATTGCGGATACGCTAACTAATGCCTACACTATGTTGGACAATGAGGAA
TTCTCCAGTCTTGCTAATGTCCGTTCAGCAATGAATGACATGGAAAGTGTCGAAGAATATGACCCTGAATACCGTGAAAT
TTCAAGTTCTCTATCAGAAACATACTATGTTTTAGAAGATATTACCAAGCGTTTGGAAGATATTATTGATGACTTGGATT
TTGATGGTAATCGTCTCATGCAGGTTGAAAATCGCTTAGACCTTCTGAATACTATTACCCGCAAGTATGGTGGAACTGTG
GACGACGTTTTGCTTTATTTTGCCAAGATTACGGATGAGTACAATCTCTTGACTGGAAATAATCTTTCTTCCGAAGATAT
GGAAGCAGAGCTTAAGAAATTGGAAGTTAATCTTGTTGATTTGGCAGGGCAACTTGCATCTGCTCGTCATGACTTGGCCC
AGCAGCTTGAGGCAGAGATTAAACAAGAACTGCAAGATCTCTATATGGAGAAGGCACAGTTCCAGGTTCGCTTTAGTAAG
AGTAAGTTCAGCCGTGAAGGAAATGAAGCAGTCGAATTTTACATTTCCACCAACCCAGGTGAGGACTTTAAGCCTTTGGT
CAAAGTTGCATCTGGTGGGGAATTATCCCGCCTCATGCTAGCTATTAAATCCGCCTTTTCTCGCAAAGAAGGTAAGACTA
GTATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTGGCCCAAGCCATTGCTCAAAAGATTCATAAGATTGGT
CAGCATGGCCAAGTCTTAGCAATCTCTCACTTACCTCAAGTAATTGCGATCGCGGATTATCAATTCTTTATTGAAAAGAT
TAGCGATGAGCATTCAACTGTTTCCACAGTTCGTTTGCTTACCCTTGAAGAACGAGTAGAGGAAGTTGCTAAGATGTTAG
CAGGAGAGAATGTAACAGAAGCAGCCCTTACCCAAGCGAGAGAATTATTGCAAACGAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.486

100

0.445