Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KX728_RS00160 Genome accession   NZ_CP079724
Coordinates   29175..29945 (+) Length   256 a.a.
NCBI ID   WP_070534765.1    Uniprot ID   -
Organism   Streptococcus oralis strain 34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24175..34945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KX728_RS00135 (KX728_00135) - 24585..25079 (+) 495 WP_002876632.1 carbonic anhydrase -
  KX728_RS00140 (KX728_00140) - 25293..26261 (+) 969 WP_000010174.1 ribose-phosphate diphosphokinase -
  KX728_RS00145 (KX728_00145) - 26381..26818 (+) 438 WP_049490128.1 CoA-binding protein -
  KX728_RS00150 (KX728_00150) - 26847..27857 (-) 1011 WP_000009151.1 YeiH family protein -
  KX728_RS00155 (KX728_00155) - 28009..29178 (+) 1170 WP_084917280.1 pyridoxal phosphate-dependent aminotransferase -
  KX728_RS00160 (KX728_00160) recO 29175..29945 (+) 771 WP_070534765.1 DNA repair protein RecO Machinery gene
  KX728_RS00165 (KX728_00165) plsX 29942..30934 (+) 993 WP_084917282.1 phosphate acyltransferase PlsX -
  KX728_RS00170 (KX728_00170) - 30940..31176 (+) 237 WP_045593788.1 acyl carrier protein -
  KX728_RS00175 (KX728_00175) - 31495..31638 (+) 144 WP_000180838.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  KX728_RS00180 (KX728_00180) - 31656..31805 (+) 150 WP_001052546.1 class IIb bacteriocin, lactobin A/cerein 7B family -
  KX728_RS00185 (KX728_00185) - 31818..31994 (+) 177 WP_000793177.1 hypothetical protein -
  KX728_RS00190 (KX728_00190) - 32144..32299 (+) 156 WP_000661692.1 hypothetical protein -
  KX728_RS00195 (KX728_00195) - 32324..32545 (+) 222 WP_001081404.1 hypothetical protein -
  KX728_RS00200 (KX728_00200) - 32583..32771 (+) 189 WP_000722236.1 hypothetical protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29848.35 Da        Isoelectric Point: 5.3733

>NTDB_id=514577 KX728_RS00160 WP_070534765.1 29175..29945(+) (recO) [Streptococcus oralis strain 34]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQAGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADVSLQDNQQDAPLFAFLRKTLELMEAGIDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKAEIKQELRKFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEENK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=514577 KX728_RS00160 WP_070534765.1 29175..29945(+) (recO) [Streptococcus oralis strain 34]
ATGATTCAGTCTATCACGAGTCAAGGTCTCGTACTCTACAATCGTAACTTTCGTGAGGATGACAAGCTAGTCAAAATTTT
TACCGAGCAGGCGGGCAAGCGCATGTTTTTCGTCAAACACGCTGGCCAGTCCAAACTAGCTCCGGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATCAATGATGACGGGCTTAGCTACATCGAGGACTACCATGAGGTGATGACCTTTCCA
AAGATTAATAGTGATCTCTTTGTTATGGCCTATGCTACCTATGTGGCAGCTCTTGCAGATGTTAGTTTGCAGGATAATCA
GCAGGATGCTCCCTTGTTTGCTTTCTTGAGAAAGACTCTGGAGTTGATGGAAGCAGGGATAGATTATCAGGTCTTAACCA
ATATTTTTGAAATTCAAATCTTGACTCGATTTGGAATCAGCCTTAATTTTAATGAGTGTGTCTTTTGCCATCGGGTGGGT
CAGGCCTTTGACTTTTCTTTCAAATATGGAGCCTGCCTTTGCCCAGAGCATTATCATGAGGATGAGAGACGTTGTCATCT
CAATCCCAATATCCCTTATCTGCTCAATCAATTTCAAGCCATTGATTTTGAAACCTTGGAGACCATTTCGCTTAAGGCAG
AAATCAAGCAAGAGCTACGCAAGTTTATGGATCAACTCTACGAAGAGTACGTTGGGATTCACCTTAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAACAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

96.484

100

0.965