Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I8N73_RS13180 Genome accession   NZ_CP065791
Coordinates   2710452..2711219 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain LBUM279     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2705452..2716219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N73_RS13160 (I8N73_13160) - 2705654..2706466 (-) 813 WP_199022045.1 pyruvate, water dikinase regulatory protein -
  I8N73_RS13165 (I8N73_13165) ccpN 2706492..2707130 (-) 639 WP_144464144.1 transcriptional regulator CcpN -
  I8N73_RS13170 (I8N73_13170) glyS 2707231..2709270 (-) 2040 WP_144663977.1 glycine--tRNA ligase subunit beta -
  I8N73_RS13175 (I8N73_13175) glyQ 2709263..2710150 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  I8N73_RS13180 (I8N73_13180) recO 2710452..2711219 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  I8N73_RS13185 (I8N73_13185) - 2711256..2711399 (-) 144 WP_007408286.1 YqzL family protein -
  I8N73_RS13190 (I8N73_13190) era 2711555..2712460 (-) 906 WP_007408285.1 GTPase Era -
  I8N73_RS13195 (I8N73_13195) - 2712441..2712851 (-) 411 WP_003152976.1 cytidine deaminase -
  I8N73_RS13200 (I8N73_13200) - 2712975..2713349 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  I8N73_RS13205 (I8N73_13205) ybeY 2713330..2713803 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  I8N73_RS13210 (I8N73_13210) - 2713804..2715936 (-) 2133 WP_113766760.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=514556 I8N73_RS13180 WP_007408287.1 2710452..2711219(-) (recO) [Bacillus velezensis strain LBUM279]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=514556 I8N73_RS13180 WP_007408287.1 2710452..2711219(-) (recO) [Bacillus velezensis strain LBUM279]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCAGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89