Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I8N72_RS07420 Genome accession   NZ_CP065790
Coordinates   1417141..1417425 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM1082     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412141..1422425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N72_RS07400 (I8N72_07400) - 1413388..1414296 (+) 909 WP_003154561.1 ketopantoate reductase family protein -
  I8N72_RS07405 (I8N72_07405) - 1414326..1415558 (-) 1233 WP_003154560.1 aminopeptidase -
  I8N72_RS07410 (I8N72_07410) - 1415659..1415793 (-) 135 WP_003154559.1 protein YkpC -
  I8N72_RS07415 (I8N72_07415) mreBH 1415865..1416872 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  I8N72_RS07420 (I8N72_07420) abrB 1417141..1417425 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I8N72_RS07425 (I8N72_07425) - 1417598..1418902 (+) 1305 WP_003154556.1 ATP-binding protein -
  I8N72_RS07430 (I8N72_07430) - 1418904..1419731 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  I8N72_RS07435 (I8N72_07435) ktrC 1419772..1420437 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  I8N72_RS07440 (I8N72_07440) ade 1420586..1422319 (+) 1734 WP_015388297.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=514466 I8N72_RS07420 WP_003154557.1 1417141..1417425(+) (abrB) [Bacillus velezensis strain LBUM1082]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=514466 I8N72_RS07420 WP_003154557.1 1417141..1417425(+) (abrB) [Bacillus velezensis strain LBUM1082]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543