Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   I8N72_RS07310 Genome accession   NZ_CP065790
Coordinates   1396646..1397242 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain LBUM1082     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1391646..1402242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N72_RS07280 (I8N72_07280) - 1391861..1392316 (+) 456 WP_003154599.1 flavodoxin -
  I8N72_RS07285 (I8N72_07285) dapD 1392398..1393108 (+) 711 WP_015388304.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  I8N72_RS07290 (I8N72_07290) - 1393179..1394303 (+) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  I8N72_RS07295 (I8N72_07295) - 1394364..1394609 (+) 246 WP_003154596.1 YkuS family protein -
  I8N72_RS07300 (I8N72_07300) - 1394643..1395449 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  I8N72_RS07305 (I8N72_07305) - 1395736..1396194 (+) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  I8N72_RS07310 (I8N72_07310) rok 1396646..1397242 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  I8N72_RS07315 (I8N72_07315) - 1397263..1398255 (-) 993 WP_003154589.1 hypothetical protein -
  I8N72_RS07320 (I8N72_07320) - 1398401..1399003 (+) 603 WP_015388303.1 molybdenum cofactor guanylyltransferase -
  I8N72_RS07325 (I8N72_07325) - 1399055..1400074 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  I8N72_RS07330 (I8N72_07330) glp 1400092..1401384 (+) 1293 WP_015388302.1 gephyrin-like molybdotransferase Glp -
  I8N72_RS07335 (I8N72_07335) mobB 1401345..1401866 (+) 522 WP_015388301.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=514465 I8N72_RS07310 WP_003154591.1 1396646..1397242(+) (rok) [Bacillus velezensis strain LBUM1082]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=514465 I8N72_RS07310 WP_003154591.1 1396646..1397242(+) (rok) [Bacillus velezensis strain LBUM1082]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCTGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843