Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HIFGL_RS00170 Genome accession   NC_022356
Coordinates   37094..37696 (-) Length   200 a.a.
NCBI ID   WP_021034375.1    Uniprot ID   -
Organism   Haemophilus influenzae KR494     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32094..42696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIFGL_RS00145 (HifGL_000029) - 33077..33595 (+) 519 WP_041175236.1 hemerythrin domain-containing protein -
  HIFGL_RS00150 (HifGL_000030) - 33592..33813 (+) 222 WP_021034372.1 sulfurtransferase TusA family protein -
  HIFGL_RS09365 - 33988..34221 (-) 234 WP_228003467.1 phage integrase central domain-containing protein -
  HIFGL_RS09370 - 34279..34470 (-) 192 WP_172453994.1 integrase arm-type DNA-binding domain-containing protein -
  HIFGL_RS00160 (HifGL_000031) secG 34673..35014 (-) 342 WP_021034373.1 preprotein translocase subunit SecG -
  HIFGL_RS00165 (HifGL_000032) - 35123..37078 (-) 1956 WP_021034374.1 DNA topoisomerase III -
  HIFGL_RS00170 (HifGL_000033) recR 37094..37696 (-) 603 WP_021034375.1 recombination mediator RecR Machinery gene
  HIFGL_RS00175 (HifGL_000034) - 37829..38158 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  HIFGL_RS00180 (HifGL_000035) - 38310..39155 (-) 846 WP_021034376.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  HIFGL_RS00185 (HifGL_000036) - 39229..41829 (-) 2601 WP_021034377.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22121.22 Da        Isoelectric Point: 6.4840

>NTDB_id=51446 HIFGL_RS00170 WP_021034375.1 37094..37696(-) (recR) [Haemophilus influenzae KR494]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSRIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGDLETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=51446 HIFGL_RS00170 WP_021034375.1 37094..37696(-) (recR) [Haemophilus influenzae KR494]
ATGCAAAGCAGTCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCTGGCGTAGGGCCTAAATCGGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCTCTCACAGAAGCGATGTCTAGAA
TTGGCCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACCTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCAGATATTCAAGCGATTGAGCAAACTGGACAATTTTCAGGACGTTATTTTGT
TTTAATGGGACACTTGTCTCCACTTGATGGCATTGGTCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGTTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACTGTGGAAGGCGATGCAACAGCAAACTACATCGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCTGTGGGTGGGGACCTAGAAACTGTAGACGGCAC
AACGCTTACCCACTCATTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment