Detailed information NTG0514444

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: I8N72_RS01935
• Genome accession: NZ_CP065790
• Coordinates: 383416..384564 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain LBUM1082
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 378416..389564

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I8N72_RS01915 (I8N72_01915)	-	378813..379496 (-)	684	WP_015388709.1	ABC transporter ATP-binding protein	-
I8N72_RS01920 (I8N72_01920)	-	379511..380947 (-)	1437	WP_015388708.1	ABC transporter permease	-
I8N72_RS01925 (I8N72_01925)	-	381160..381843 (+)	684	WP_015388707.1	response regulator transcription factor	-
I8N72_RS01930 (I8N72_01930)	-	381830..383263 (+)	1434	WP_161625271.1	sensor histidine kinase	-
I8N72_RS01935 (I8N72_01935)	rapC	383416..384564 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
I8N72_RS01940 (I8N72_01940)	phrC	384548..384667 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
I8N72_RS01945 (I8N72_01945)	-	384817..384927 (-)	111	WP_369719092.1	YjcZ family sporulation protein	-
I8N72_RS01950 (I8N72_01950)	-	385007..386371 (-)	1365	WP_014304341.1	aspartate kinase	-
I8N72_RS01955 (I8N72_01955)	ceuB	386786..387739 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
I8N72_RS01960 (I8N72_01960)	-	387729..388676 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
I8N72_RS01965 (I8N72_01965)	-	388670..389428 (+)	759	WP_015388706.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=514444 I8N72_RS01935 WP_014304340.1 383416..384564(+) (rapC) [Bacillus velezensis strain LBUM1082]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=514444 I8N72_RS01935 WP_014304340.1 383416..384564(+) (rapC) [Bacillus velezensis strain LBUM1082]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568