Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   I8N71_RS19115 Genome accession   NZ_CP065789
Coordinates   3644212..3644901 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain LBUM979     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3639212..3649901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N71_RS19080 (I8N71_19080) flgN 3639388..3639870 (-) 483 WP_003227999.1 flagellar protein FlgN -
  I8N71_RS19085 (I8N71_19085) flgM 3639886..3640146 (-) 261 WP_198082060.1 flagellar biosynthesis anti-sigma factor FlgM -
  I8N71_RS19090 (I8N71_19090) yvyF 3640237..3640656 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  I8N71_RS19095 (I8N71_19095) comFC 3640730..3641452 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  I8N71_RS19100 (I8N71_19100) comFB 3641416..3641712 (-) 297 WP_003227989.1 late competence protein ComFB -
  I8N71_RS19105 (I8N71_19105) comFA 3641772..3643163 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  I8N71_RS19110 (I8N71_19110) fakBA 3643269..3644114 (-) 846 WP_003244125.1 DegV family protein -
  I8N71_RS19115 (I8N71_19115) degU 3644212..3644901 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  I8N71_RS19120 (I8N71_19120) degS 3644984..3646141 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  I8N71_RS19125 (I8N71_19125) yvyE 3646358..3647011 (+) 654 WP_003227979.1 YigZ family protein -
  I8N71_RS19130 (I8N71_19130) tagV 3647011..3648186 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  I8N71_RS19135 (I8N71_19135) tagO 3648259..3649335 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=514425 I8N71_RS19115 WP_003219701.1 3644212..3644901(-) (degU) [Bacillus subtilis strain LBUM979]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=514425 I8N71_RS19115 WP_003219701.1 3644212..3644901(-) (degU) [Bacillus subtilis strain LBUM979]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1