Detailed information NTG0514403

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: KXE08_RS06835
• Genome accession: NZ_CP079712
• Coordinates: 1456297..1457301 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAO1-UW
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1451297..1462301

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KXE08_RS06805 (KXE08_06790)	fghA	1451389..1452240 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
KXE08_RS06810 (KXE08_06795)	ispF	1452311..1452784 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
KXE08_RS06815 (KXE08_06800)	truD	1452781..1453848 (+)	1068	WP_003113870.1	tRNA pseudouridine(13) synthase TruD	-
KXE08_RS06820 (KXE08_06805)	surE	1453836..1454585 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
KXE08_RS06825 (KXE08_06810)	-	1454618..1455253 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
KXE08_RS06830 (KXE08_06815)	-	1455299..1456192 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
KXE08_RS06835 (KXE08_06820)	rpoS	1456297..1457301 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
KXE08_RS06840 (KXE08_06825)	fdxA	1457728..1458051 (-)	324	WP_003092272.1	ferredoxin FdxA	-
KXE08_RS06845 (KXE08_06830)	mutS	1458118..1460685 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
KXE08_RS06850 (KXE08_06835)	-	1460811..1461818 (-)	1008	WP_003113874.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=514403 KXE08_RS06835 WP_003113871.1 1456297..1457301(+) (rpoS) [Pseudomonas aeruginosa strain PAO1-UW]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=514403 KXE08_RS06835 WP_003113871.1 1456297..1457301(+) (rpoS) [Pseudomonas aeruginosa strain PAO1-UW]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653