Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I8N71_RS12140 Genome accession   NZ_CP065789
Coordinates   2340409..2341029 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain LBUM979     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335409..2346029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I8N71_RS12100 (I8N71_12100) ptsA 2336540..2337046 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  I8N71_RS12105 (I8N71_12105) ypqA 2337184..2337603 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  I8N71_RS12110 (I8N71_12110) sppG 2337624..2338001 (-) 378 WP_004398696.1 YppG family protein -
  I8N71_RS12115 (I8N71_12115) yppF 2338189..2338377 (+) 189 WP_003230690.1 YppF family protein -
  I8N71_RS12120 (I8N71_12120) yppE 2338416..2338787 (-) 372 WP_003246080.1 YppE family protein -
  I8N71_RS12125 (I8N71_12125) yppD 2338833..2339078 (-) 246 WP_004398488.1 YppD family protein -
  I8N71_RS12130 (I8N71_12130) sspM 2339277..2339381 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  I8N71_RS12135 (I8N71_12135) yppC 2339406..2340368 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  I8N71_RS12140 (I8N71_12140) recU 2340409..2341029 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  I8N71_RS12145 (I8N71_12145) ponA 2341051..2343795 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  I8N71_RS12150 (I8N71_12150) ypoC 2343871..2344365 (-) 495 WP_009967579.1 YpoC family protein -
  I8N71_RS12155 (I8N71_12155) nth 2344362..2345021 (-) 660 WP_009967580.1 endonuclease III -
  I8N71_RS12160 (I8N71_12160) dnaD 2345040..2345738 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=514392 I8N71_RS12140 WP_004399067.1 2340409..2341029(+) (recU) [Bacillus subtilis strain LBUM979]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=514392 I8N71_RS12140 WP_004399067.1 2340409..2341029(+) (recU) [Bacillus subtilis strain LBUM979]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1