Detailed information NTG0514353

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: KYF39_RS04050
• Genome accession: NZ_CP079205
• Coordinates: 872209..873558 (-)
• Length: 449 a.a.
• NCBI ID: WP_013446925.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer RA-YM
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 867209..878558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KYF39_RS04030 (KYF39_04030)	-	867555..868979 (-)	1425	WP_004918166.1	redoxin domain-containing protein	-
KYF39_RS04035 (KYF39_04035)	-	869192..870004 (+)	813	WP_231348780.1	GLPGLI family protein	-
KYF39_RS04040 (KYF39_04040)	-	870046..870510 (-)	465	WP_004918163.1	heme-binding domain-containing protein	-
KYF39_RS04045 (KYF39_04045)	-	870522..872162 (-)	1641	WP_004918161.1	Ig-like domain-containing protein	-
KYF39_RS04050 (KYF39_04050)	radA	872209..873558 (-)	1350	WP_013446925.1	DNA repair protein RadA	Machinery gene
KYF39_RS04055 (KYF39_04055)	-	873652..874416 (+)	765	WP_004918157.1	enoyl-CoA hydratase/isomerase family protein	-
KYF39_RS04060 (KYF39_04060)	-	874495..876627 (-)	2133	WP_004918155.1	S8 family peptidase	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49639.14 Da
• Isoelectric Point: 7.2681

>NTDB_id=514353 KYF39_RS04050 WP_013446925.1 872209..873558(-) (radA) [Riemerella anatipestifer RA-YM]
MAKLKTVYYCQNCGSQHSKWHGQCQNCGQWNTLVEEIAEKTTSKNYAGDFGRQHLINIIEVETQAEQRIKTPSEELNRVL
GGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRLTELQNPNCFLYTETSIEKILHEAKKL
QPDFMIVDSIQTLHSQVMESSPGTVSQIRECASEVIKFAKATNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDKNH
LFRLLRANKNRFGSTAEIGIYEMISAGLKEIKNPSEVLITKKSEEFSGNAVAVTLEGNRPMLLEIQALVSTAVYGTPQRS
STGFDAKRLNMLLAVLEKRSGFQLGAKDVFLNITGGIKTDDPALDLAVVAAILSSNEDVAVSEHYCFAGEIGLSGEIRPV
PQIEKRISEAEKLGYHKIFVSKQNKIPKKKHDIKIVEVSKIEDFHEEIF

Nucleotide

• Length: 1350 bp

>NTDB_id=514353 KYF39_RS04050 WP_013446925.1 872209..873558(-) (radA) [Riemerella anatipestifer RA-YM]
GTGGCTAAATTAAAAACAGTATATTATTGTCAGAATTGTGGTTCACAACATTCCAAATGGCACGGGCAATGCCAAAATTG
TGGACAATGGAATACTTTAGTGGAAGAGATTGCAGAAAAAACAACCTCTAAAAATTATGCAGGAGATTTTGGAAGACAAC
ACCTCATCAATATCATAGAAGTAGAAACACAAGCTGAACAACGCATTAAAACTCCAAGCGAAGAACTTAACAGAGTTTTG
GGTGGCGGTATTGTTTTAGGTTCGGTAACTCTTATTGGCGGAGAACCAGGTATAGGGAAATCTACACTACTATTGCAATT
AGCCCTTAAAATGAAGAAAAAAATCCTCTATGTTTCTGGGGAAGAAAGTGCCTCTCAAATCAAAATGAGAGCAGATAGAC
TAACGGAACTCCAAAATCCGAATTGTTTTTTATACACCGAAACTTCAATAGAGAAAATTTTACACGAAGCCAAAAAACTT
CAGCCTGATTTTATGATTGTGGATTCCATACAAACTCTGCACTCGCAGGTGATGGAGAGTTCCCCAGGTACGGTATCTCA
GATTAGAGAATGTGCTTCGGAAGTTATAAAGTTTGCAAAAGCGACTAACACGCCTGTTTTTTTAGTGGGACACATTACTA
AAGATGGACAAATAGCTGGACCAAAAGTATTGGAGCATATGGTAGATGTAGTTCTTAATTTTGATGGTGATAAAAACCAT
TTGTTTAGACTTTTAAGAGCAAATAAAAATCGTTTTGGTTCTACGGCGGAGATTGGTATTTATGAGATGATTTCGGCAGG
ATTGAAAGAAATTAAAAATCCTTCGGAAGTGCTTATTACTAAAAAATCTGAGGAATTTTCAGGGAATGCGGTGGCAGTAA
CGCTAGAAGGTAACCGCCCTATGTTGCTAGAAATACAAGCCCTTGTAAGTACAGCCGTGTATGGTACACCACAGAGAAGT
TCTACGGGGTTTGATGCTAAAAGACTCAATATGCTTTTGGCAGTTTTAGAGAAACGCTCTGGTTTTCAGCTCGGAGCTAA
AGATGTATTTTTAAACATTACAGGAGGTATTAAAACAGACGACCCCGCTCTAGATTTGGCTGTGGTAGCTGCTATCTTAT
CTTCCAACGAGGATGTTGCAGTGTCGGAGCATTATTGTTTTGCTGGGGAAATTGGTCTTAGTGGAGAAATTCGTCCTGTG
CCACAAATAGAAAAACGCATCTCCGAAGCCGAAAAATTAGGCTATCATAAAATTTTTGTTTCTAAACAAAATAAGATACC
AAAGAAAAAACACGATATAAAGATTGTGGAAGTTTCTAAAATAGAAGACTTTCACGAAGAGATATTTTAA

Domains

Predicted by InterProScan.

• AAA domain (AAA_25) (63-217)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (336-424)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	47.253	100	0.479
radA	Streptococcus pneumoniae Rx1	47.149	100	0.479
radA	Streptococcus pneumoniae D39	47.149	100	0.479
radA	Streptococcus pneumoniae TIGR4	47.149	100	0.479
radA	Streptococcus pneumoniae R6	47.149	100	0.479
radA	Streptococcus mitis SK321	47.02	100	0.474
radA/sms	Bacillus subtilis subsp. subtilis str. 168	48.38	96.214	0.465