Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   STRR_RS04040 Genome accession   NZ_CP065788
Coordinates   769314..770126 (+) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus strain RR     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 764314..775126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRR_RS04015 (STRR_03990) - 764413..765111 (-) 699 WP_014608374.1 amino acid ABC transporter permease -
  STRR_RS04020 (STRR_03995) - 765129..765962 (-) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  STRR_RS04025 (STRR_04000) - 765974..766741 (-) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  STRR_RS04030 (STRR_04005) vicR 767268..767975 (+) 708 WP_011681206.1 response regulator YycF Regulator
  STRR_RS04035 (STRR_04010) vicK 767968..769308 (+) 1341 WP_011681205.1 cell wall metabolism sensor histidine kinase VicK Regulator
  STRR_RS04040 (STRR_04015) vicX 769314..770126 (+) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  STRR_RS04045 (STRR_04020) - 770186..770547 (+) 362 Protein_750 YbaN family protein -
  STRR_RS04050 (STRR_04025) - 770599..771813 (-) 1215 WP_002953123.1 aminoacyltransferase -
  STRR_RS04055 (STRR_04030) yidA 771815..772624 (-) 810 WP_071417357.1 sugar-phosphatase -
  STRR_RS04060 (STRR_04035) - 772832..773710 (+) 879 Protein_753 GNAT family N-acetyltransferase -
  STRR_RS04065 (STRR_04040) - 773802..774188 (+) 387 WP_002953113.1 DUF1934 domain-containing protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=514321 STRR_RS04040 WP_011681204.1 769314..770126(+) (vicX) [Streptococcus thermophilus strain RR]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=514321 STRR_RS04040 WP_011681204.1 769314..770126(+) (vicX) [Streptococcus thermophilus strain RR]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774