Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STRR_RS02220 Genome accession   NZ_CP065788
Coordinates   411097..411540 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain RR     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 406097..416540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRR_RS02200 (STRR_02195) - 406621..407373 (-) 753 WP_014727345.1 NUDIX hydrolase -
  STRR_RS02205 (STRR_02200) - 407437..408542 (-) 1106 Protein_386 AAA family ATPase -
  STRR_RS02210 (STRR_02205) gdhA 408886..410238 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STRR_RS02215 (STRR_02210) - 410496..410906 (+) 411 WP_011680804.1 peptide deformylase -
  STRR_RS02220 (STRR_02215) rcrR 411097..411540 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STRR_RS02225 (STRR_02220) rcrP 411544..413358 (+) 1815 WP_014727346.1 ABC transporter ATP-binding protein Regulator
  STRR_RS02230 (STRR_02225) rcrQ 413348..415126 (+) 1779 WP_023909433.1 ABC transporter ATP-binding protein Regulator
  STRR_RS02235 (STRR_02230) - 415282..415539 (+) 258 WP_224107491.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=514309 STRR_RS02220 WP_002945408.1 411097..411540(+) (rcrR) [Streptococcus thermophilus strain RR]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=514309 STRR_RS02220 WP_002945408.1 411097..411540(+) (rcrR) [Streptococcus thermophilus strain RR]
ATGCATGGGAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537