Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   STMM8_RS02245 Genome accession   NZ_CP065787
Coordinates   409966..410409 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MM8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 404966..415409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STMM8_RS02225 (STMM8_02225) - 405489..406243 (-) 755 Protein_377 NUDIX domain-containing protein -
  STMM8_RS02230 (STMM8_02230) - 406307..407412 (-) 1106 Protein_378 AAA family ATPase -
  STMM8_RS02235 (STMM8_02235) gdhA 407756..409108 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  STMM8_RS02240 (STMM8_02240) - 409366..409776 (+) 411 WP_011680804.1 peptide deformylase -
  STMM8_RS02245 (STMM8_02245) rcrR 409966..410409 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  STMM8_RS02250 (STMM8_02250) rcrP 410413..412227 (+) 1815 WP_022096861.1 ABC transporter ATP-binding protein Regulator
  STMM8_RS02255 (STMM8_02255) rcrQ 412217..413995 (+) 1779 WP_022096860.1 ABC transporter ATP-binding protein Regulator
  STMM8_RS02260 (STMM8_02260) - 414151..414522 (+) 372 WP_002945426.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=514251 STMM8_RS02245 WP_002945408.1 409966..410409(+) (rcrR) [Streptococcus thermophilus strain MM8]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=514251 STMM8_RS02245 WP_002945408.1 409966..410409(+) (rcrR) [Streptococcus thermophilus strain MM8]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537