Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KV381_RS28985 Genome accession   NZ_CP079114
Coordinates   6618463..6619554 (+) Length   363 a.a.
NCBI ID   WP_218786693.1    Uniprot ID   -
Organism   Streptomyces sp. WY228     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6613463..6624554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS28965 (KV381_28965) - 6613654..6614364 (-) 711 WP_030079936.1 GntR family transcriptional regulator -
  KV381_RS28970 (KV381_28970) - 6614699..6616444 (+) 1746 WP_218786692.1 ABC transporter substrate-binding protein -
  KV381_RS28975 (KV381_28975) - 6616483..6617478 (+) 996 WP_256995166.1 ABC transporter permease -
  KV381_RS28980 (KV381_28980) - 6617475..6618461 (+) 987 WP_030079930.1 ABC transporter permease -
  KV381_RS28985 (KV381_28985) amiE 6618463..6619554 (+) 1092 WP_218786693.1 ABC transporter ATP-binding protein Regulator
  KV381_RS28990 (KV381_28990) - 6619551..6620588 (+) 1038 WP_256995167.1 ABC transporter ATP-binding protein -
  KV381_RS28995 (KV381_28995) - 6620834..6623173 (+) 2340 WP_373461126.1 M9 family metallopeptidase -
  KV381_RS29000 (KV381_29000) - 6623319..6624377 (+) 1059 WP_030079922.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38522.06 Da        Isoelectric Point: 7.5776

>NTDB_id=514230 KV381_RS28985 WP_218786693.1 6618463..6619554(+) (amiE) [Streptomyces sp. WY228]
MPSTTEPDRLLEPDRPLLRVHDLRVAFDTPAGTVQAVDGVSFTVEAGRTLGLVGESGSGKSVTSLAVMGLHRRARVSGSV
TLAGQELLGLTDRRFGRLRGRRMAMVFQDPLSALHPAYTVGEQIAEAHRHHFGSGRRVARRRAVEMLGEVGIPEPARRAG
EYAHQFSGGMRQRAMIAMALACEPELLVADEPTTALDVTVQAQILELIARLQQERGLGVLMITHDLGVVARVAHEVLVMY
GGRGAEQAPVDDLFHSPAHPYTRGLLDSLPRLDDPDDAPLRAIPGSPLSPAAPRAGCPFAPRCPRAAAATAPERARCAGE
SPHPRDVPGGGRLVSCHLPLPPTPATPHAGPAGGVPVPAEEAR

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=514230 KV381_RS28985 WP_218786693.1 6618463..6619554(+) (amiE) [Streptomyces sp. WY228]
GTGCCGTCCACCACCGAACCGGACCGACTCCTCGAACCGGACCGGCCCCTGCTGCGCGTCCACGACCTGCGGGTCGCCTT
CGACACCCCCGCCGGCACCGTCCAGGCGGTCGACGGGGTCTCCTTCACCGTGGAGGCTGGCCGCACCCTGGGTCTGGTCG
GCGAATCCGGCTCCGGCAAGTCGGTCACCTCTCTCGCCGTGATGGGCCTGCACCGCCGGGCCCGGGTGAGCGGATCGGTC
ACCCTCGCCGGACAGGAACTCCTCGGCCTGACCGACCGCCGGTTCGGCCGGCTGCGCGGACGCCGGATGGCCATGGTCTT
CCAGGACCCGCTGTCCGCACTGCACCCCGCGTACACGGTCGGCGAACAGATCGCGGAGGCCCACCGCCACCACTTCGGCA
GCGGCCGGCGCGTCGCCCGCAGACGGGCCGTGGAGATGCTCGGCGAGGTCGGCATCCCCGAACCGGCCCGCCGGGCGGGG
GAGTACGCGCACCAGTTCTCCGGCGGCATGCGCCAGCGCGCCATGATCGCCATGGCCCTGGCCTGCGAACCCGAACTGCT
CGTCGCCGACGAACCGACCACCGCACTCGACGTCACCGTCCAGGCGCAGATCCTCGAACTCATCGCCCGGCTCCAGCAGG
AACGCGGACTGGGCGTGCTGATGATCACCCACGACCTGGGCGTGGTGGCCCGCGTCGCCCACGAGGTGCTCGTGATGTAC
GGCGGGCGCGGCGCCGAACAGGCCCCGGTGGACGACCTGTTCCACAGCCCGGCCCACCCCTACACCCGGGGCCTCCTGGA
CTCGCTGCCCCGCCTGGACGACCCGGACGACGCCCCGCTGCGCGCCATCCCCGGCTCCCCGCTGTCCCCCGCCGCACCAC
GGGCCGGCTGCCCCTTCGCGCCGCGCTGCCCCCGGGCGGCCGCCGCCACCGCCCCGGAGCGGGCCCGCTGCGCCGGGGAG
AGCCCGCACCCCCGGGACGTGCCCGGCGGCGGCCGGCTGGTCTCCTGCCATCTACCCCTGCCGCCCACCCCGGCCACCCC
GCACGCCGGTCCGGCCGGTGGGGTGCCCGTACCGGCCGAGGAGGCCCGATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(38-193)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(246-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

45.307

85.124

0.386
  oppD Streptococcus mutans UA159

47.423

80.165

0.38
  amiE Streptococcus thermophilus LMG 18311

44.66

85.124

0.38
  amiE Streptococcus thermophilus LMD-9

44.66

85.124

0.38