Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   KV381_RS24820 Genome accession   NZ_CP079114
Coordinates   5638768..5639745 (+) Length   325 a.a.
NCBI ID   WP_030630905.1    Uniprot ID   -
Organism   Streptomyces sp. WY228     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5633768..5644745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KV381_RS24800 (KV381_24800) - 5633775..5634920 (+) 1146 WP_218786319.1 ABC transporter ATP-binding protein -
  KV381_RS24805 (KV381_24805) - 5635104..5636741 (+) 1638 WP_218786322.1 ABC transporter substrate-binding protein -
  KV381_RS24810 (KV381_24810) - 5636861..5637784 (+) 924 WP_030082826.1 ABC transporter permease -
  KV381_RS24815 (KV381_24815) - 5637777..5638754 (+) 978 WP_030082828.1 ABC transporter permease -
  KV381_RS24820 (KV381_24820) amiE 5638768..5639745 (+) 978 WP_030630905.1 ABC transporter ATP-binding protein Regulator
  KV381_RS24825 (KV381_24825) - 5639735..5640976 (+) 1242 WP_030630909.1 ABC transporter ATP-binding protein -
  KV381_RS24830 (KV381_24830) - 5641181..5642245 (+) 1065 WP_247595059.1 hypothetical protein -
  KV381_RS24835 (KV381_24835) - 5642278..5644404 (-) 2127 WP_218786324.1 S9 family peptidase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35829.68 Da        Isoelectric Point: 6.6959

>NTDB_id=514210 KV381_RS24820 WP_030630905.1 5638768..5639745(+) (amiE) [Streptomyces sp. WY228]
MLLEVRDLHVEFHTREGVAKAVNGVNYSVAEGETLAVLGESGSGKSVTAQAIMGILDMPPGKIAGGEILFKDQDLLKLKA
DERRKIRGQEMAMIFQDALSSLNPVLTVGEQLGEMFVVHRGMSRKDAKAKSVELMDRVRIPAAKERVGQYPHQFSGGMRQ
RIMIAMAMALEPSLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVETAPVHE
IYKAPAHPYTKGLLRSIPRLDQKGQELYAIKGLPPNLTRIPPGCAFNPRCPMAQDVCRSDVPPLYEVDEQRRSACHFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=514210 KV381_RS24820 WP_030630905.1 5638768..5639745(+) (amiE) [Streptomyces sp. WY228]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGCGAAGGCGTCGCCAAGGCCGTCAACGGAGTCAACTA
CTCGGTGGCCGAGGGCGAGACGCTCGCCGTCCTCGGCGAGTCCGGCTCCGGCAAGTCCGTCACCGCCCAGGCCATCATGG
GCATCCTCGACATGCCGCCCGGGAAGATCGCCGGCGGCGAGATCCTCTTCAAGGACCAGGACCTGCTGAAGCTCAAGGCC
GACGAGCGGCGCAAGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCCCTGTCCTCGCTGAACCCGGTCCTCAC
CGTCGGCGAGCAGCTCGGCGAGATGTTCGTCGTGCACCGCGGCATGTCCCGCAAGGACGCGAAGGCCAAGTCGGTCGAGC
TGATGGACCGGGTCCGCATCCCCGCCGCGAAGGAACGCGTCGGCCAGTACCCGCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCCATGGCGATGGCGCTGGAACCGTCGCTGATCATCGCCGACGAGCCGACCACCGCCCTCGACGTCAC
CGTCCAGGCCCAGGTCATGGACCTGCTCGCCGAGCTCCAGCGCGAGCTGAACATGGGCCTCATCCTGATCACCCACGACC
TCGGCGTGGTCGCCGACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGCATCGTCGAGACCGCCCCCGTCCACGAG
ATCTACAAGGCCCCGGCCCACCCGTACACCAAGGGCCTCCTCCGGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
CTACGCGATCAAGGGCCTGCCGCCCAACCTCACGCGTATCCCGCCGGGCTGCGCCTTCAACCCCCGCTGCCCGATGGCCC
AGGACGTGTGCCGCAGCGATGTGCCGCCGCTCTACGAGGTGGACGAGCAGCGCCGGAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.04

98.769

0.465
  amiE Streptococcus thermophilus LMG 18311

46.106

98.769

0.455
  amiE Streptococcus thermophilus LMD-9

46.106

98.769

0.455
  oppD Streptococcus mutans UA159

46.178

96.615

0.446